Literature DB >> 9016525

The alpha/beta fold family of proteins database and the cholinesterase gene server ESTHER.

X Cousin1, T Hotelier, K Giles, P Lievin, J P Toutant, A Chatonnet.   

Abstract

ESTHER (for esterases, alpha/betahydrolase enzyme and relatives) is a database of sequences phylogenetically related to cholinesterases. These sequences define a homogeneous group of enzymes (carboxylesterases, lipases and hormone-sensitive lipases) sharing a similar structure of a central beta-sheet surrounded by alpha-helices. Among these proteins a wide range of functions can be found (hydrolases, adhesion molecules, hormone precursors). The purpose of ESTHER is to help comparison of structures and functions of members of the family. Since the last release, new features have been added to the server. A BLAST comparison tool allows sequence homology searches within the database sequences. New sections are available: kinetics and inhibitors of cholinesterases, fasciculin-acetylcholinesterase interaction and a gene structure review. The mutation analysis compilation has been improved with three-dimensional images. A mailing list has been created.

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Year:  1997        PMID: 9016525      PMCID: PMC146416          DOI: 10.1093/nar/25.1.143

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  19 in total

1.  The alpha/beta hydrolase fold.

Authors:  D L Ollis; E Cheah; M Cygler; B Dijkstra; F Frolow; S M Franken; M Harel; S J Remington; I Silman; J Schrag
Journal:  Protein Eng       Date:  1992-04

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein.

Authors:  J L Sussman; M Harel; F Frolow; C Oefner; A Goldman; L Toker; I Silman
Journal:  Science       Date:  1991-08-23       Impact factor: 47.728

4.  Cholinesterase-like domains in enzymes and structural proteins: functional and evolutionary relationships and identification of a catalytically essential aspartic acid.

Authors:  E Krejci; N Duval; A Chatonnet; P Vincens; J Massoulié
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-01       Impact factor: 11.205

Review 5.  Genetic variants of human serum cholinesterase influence metabolism of the muscle relaxant succinylcholine.

Authors:  O Lockridge
Journal:  Pharmacol Ther       Date:  1990       Impact factor: 12.310

6.  Unified approach to alignment and phylogenies.

Authors:  J Hein
Journal:  Methods Enzymol       Date:  1990       Impact factor: 1.600

7.  Fasciculins, anticholinesterase toxins from the venom of the green mamba Dendroaspis angusticeps.

Authors:  E Karlsson; P M Mbugua; D Rodriguez-Ithurralde
Journal:  J Physiol (Paris)       Date:  1984

8.  Ser-His-Glu triad forms the catalytic site of the lipase from Geotrichum candidum.

Authors:  J D Schrag; Y G Li; S Wu; M Cygler
Journal:  Nature       Date:  1991-06-27       Impact factor: 49.962

9.  Crystal structure of an acetylcholinesterase-fasciculin complex: interaction of a three-fingered toxin from snake venom with its target.

Authors:  M Harel; G J Kleywegt; R B Ravelli; I Silman; J L Sussman
Journal:  Structure       Date:  1995-12-15       Impact factor: 5.006

10.  Onchidal: a naturally occurring irreversible inhibitor of acetylcholinesterase with a novel mechanism of action.

Authors:  S N Abramson; Z Radic; D Manker; D J Faulkner; P Taylor
Journal:  Mol Pharmacol       Date:  1989-09       Impact factor: 4.436

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  15 in total

1.  A modular treatment of molecular traffic through the active site of cholinesterase.

Authors:  S A Botti; C E Felder; S Lifson; J L Sussman; I Silman
Journal:  Biophys J       Date:  1999-11       Impact factor: 4.033

2.  ESTHER, the database of the alpha/beta-hydrolase fold superfamily of proteins.

Authors:  Thierry Hotelier; Ludovic Renault; Xavier Cousin; Vincent Negre; Pascale Marchot; Arnaud Chatonnet
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  aCHEdb: the database system for ESTHER, the alpha/beta fold family of proteins and the Cholinesterase gene server.

Authors:  X Cousin; T Hotelier; K Giles; J P Toutant; A Chatonnet
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

Review 4.  Carboxylic ester hydrolases: Classification and database derived from their primary, secondary, and tertiary structures.

Authors:  Yingfei Chen; Daniel S Black; Peter J Reilly
Journal:  Protein Sci       Date:  2016-08-31       Impact factor: 6.725

5.  Neuroligin trafficking deficiencies arising from mutations in the alpha/beta-hydrolase fold protein family.

Authors:  Antonella De Jaco; Michael Z Lin; Noga Dubi; Davide Comoletti; Meghan T Miller; Shelley Camp; Mark Ellisman; Margaret T Butko; Roger Y Tsien; Palmer Taylor
Journal:  J Biol Chem       Date:  2010-07-08       Impact factor: 5.157

6.  Acetylcholinesterase active centre and gorge conformations analysed by combinatorial mutations and enantiomeric phosphonates.

Authors:  Zrinka Kovarik; Zoran Radić; Harvey A Berman; Vera Simeon-Rudolf; Elsa Reiner; Palmer Taylor
Journal:  Biochem J       Date:  2003-07-01       Impact factor: 3.857

7.  EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases.

Authors:  A Falk; B J Feys; L N Frost; J D Jones; M J Daniels; J E Parker
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-16       Impact factor: 11.205

8.  Acetylcholinesterase: from 3D structure to function.

Authors:  Hay Dvir; Israel Silman; Michal Harel; Terrone L Rosenberry; Joel L Sussman
Journal:  Chem Biol Interact       Date:  2010-02-04       Impact factor: 5.192

9.  Purification and characterization of organic solvent and detergent tolerant lipase from thermotolerant Bacillus sp. RN2.

Authors:  Pornpimon Kanjanavas; Sintawee Khuchareontaworn; Paisarn Khawsak; Arda Pakpitcharoen; Khajeenart Pothivejkul; Somchai Santiwatanakul; Kenji Matsui; Tadahiko Kajiwara; Kosum Chansiri
Journal:  Int J Mol Sci       Date:  2010-09-29       Impact factor: 5.923

10.  ESTHER, the database of the α/β-hydrolase fold superfamily of proteins: tools to explore diversity of functions.

Authors:  Nicolas Lenfant; Thierry Hotelier; Eric Velluet; Yves Bourne; Pascale Marchot; Arnaud Chatonnet
Journal:  Nucleic Acids Res       Date:  2012-11-27       Impact factor: 16.971

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