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Literature DB >> 9016512

The uRNA database.

Abstract

The uRNADB offers aligned, annotated and phylogenetically ordered sequences of several U RNAs. New to this release are RNAs from U7 (14 sequences), U8 (two sequences), U11 (three sequences), U12 (two sequences), U14 (11 sequences), U18, U48 and U49. A total of 34 new sequences were aligned with the previously compiled snRNAs U1, U2, U3, U4, U5 and U6.

Entities: Gene

Mesh：

Substances：
RNA, Small Nuclear

Year: 1997 PMID： 9016512 PMCID： PMC146409 DOI： 10.1093/nar/25.1.102

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

6 in total

1. SRP-RNA sequence alignment and secondary structure.

Authors: N Larsen; C Zwieb
Journal: Nucleic Acids Res Date: 1991-01-25 Impact factor: 16.971

2. ALMA, an editor for large sequence alignments.

Authors: S Thirup; N E Larsen
Journal: Proteins Date: 1990

3. GenBank.

Authors: D A Benson; M Boguski; D J Lipman; J Ostell
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

4. The uRNA database.

Authors: C Zwieb
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

5. The European Bioinformatics Institute (EBI) databases.

Authors: P Rodriguez-Tomé; P J Stoehr; G N Cameron; T P Flores
Journal: Nucleic Acids Res Date: 1996-01-01 Impact factor: 16.971

6. Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen.

Authors: H Leffers; J Kjems; L Ostergaard; N Larsen; R A Garrett
Journal: J Mol Biol Date: 1987-05-05 Impact factor: 5.469

6 in total

8 in total

8. Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus.

Authors: Raj Kumar Joshi; Swati Megha; Urmila Basu; Muhammad H Rahman; Nat N V Kav
Journal: PLoS One Date: 2016-07-07 Impact factor: 3.240

8 in total

The uRNA database.

1. SRP-RNA sequence alignment and secondary structure.

2. ALMA, an editor for large sequence alignments.

3. GenBank.

4. The uRNA database.

5. The European Bioinformatics Institute (EBI) databases.

6. Evolutionary relationships amongst archaebacteria. A comparative study of 23 S ribosomal RNAs of a sulphur-dependent extreme thermophile, an extreme halophile and a thermophilic methanogen.

1. HyPaLib: a database of RNAs and RNA structural elements defined by hybrid patterns.

2. Rfam: an RNA family database.

3. Exploring genomic dark matter: a critical assessment of the performance of homology search methods on noncoding RNA.

4. The snoRNA box C/D motif directs nucleolar targeting and also couples snoRNA synthesis and localization.

5. RNA search with decision trees and partial covariance models.

6. U1 small nuclear RNA and spliceosomal introns in Euglena gracilis.

7. Identification and characterization of U1 small nuclear RNA genes from two crustacean isopod species.

8. Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus.