Literature DB >> 9012808

Ribonucleotide reductase in the archaeon Pyrococcus furiosus: a critical enzyme in the evolution of DNA genomes?

J Riera1, F T Robb, R Weiss, M Fontecave.   

Abstract

Ribonucleotide reductase (RNR), the enzyme responsible for deoxyribonucleotide synthesis, has been isolated from Pyrococcus furiosus, a deeply branching hyperthermophilic, strictly anaerobic archaeon. Its gene has been cloned, sequenced, and shown to harbor two insertions encoding inteins. The purified enzyme absolutely requires adenosylcobalamin for activity, a trait that defines it as a member of class II (adenosyl-cobalamin-dependent) prokaryotic RNRs. On the other hand, the archaeal RNR has significant amino acid sequence homology with class I (aerobic non-heme iron-dependent) and class III (anaerobic iron-sulfur-dependent) RNRs present in eukaryotes and bacteria, respectively. It is proposed that this enzyme may be the closest possible relative of the original RNR, which allowed the key "RNA world" to "DNA world" transition, and that the different classes of present-day RNRs are the products of divergent evolution.

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Year:  1997        PMID: 9012808      PMCID: PMC19537          DOI: 10.1073/pnas.94.2.475

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

1.  Ribonucleotide reductase from calf thymus. Purification and properties.

Authors:  Y Engström; S Eriksson; L Thelander; M Akerman
Journal:  Biochemistry       Date:  1979-07-10       Impact factor: 3.162

2.  Characterization of C439SR1, a mutant of Escherichia coli ribonucleotide diphosphate reductase: evidence that C439 is a residue essential for nucleotide reduction and C439SR1 is a protein possessing novel thioredoxin-like activity.

Authors:  S S Mao; G X Yu; D Chalfoun; J Stubbe
Journal:  Biochemistry       Date:  1992-10-13       Impact factor: 3.162

3.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

4.  Synthesis of ATP- and dATP-substituted sepharoses and their application in the purification of phage-T4-induced ribonucleotide reductase.

Authors:  O Berglund; F Eckstein
Journal:  Eur J Biochem       Date:  1972-08-04

5.  Mechanisms of coenzyme B12-dependent rearrangements.

Authors:  J Halpern
Journal:  Science       Date:  1985-02-22       Impact factor: 47.728

6.  Tyrosyl free radical formation in the small subunit of mouse ribonucleotide reductase.

Authors:  E Ochiai; G J Mann; A Gräslund; L Thelander
Journal:  J Biol Chem       Date:  1990-09-15       Impact factor: 5.157

7.  The B12-dependent ribonucleotide reductase from the archaebacterium Thermoplasma acidophila: an evolutionary solution to the ribonucleotide reductase conundrum.

Authors:  A Tauer; S A Benner
Journal:  Proc Natl Acad Sci U S A       Date:  1997-01-07       Impact factor: 11.205

8.  A model for the role of multiple cysteine residues involved in ribonucleotide reduction: amazing and still confusing.

Authors:  S S Mao; T P Holler; G X Yu; J M Bollinger; S Booker; M I Johnston; J Stubbe
Journal:  Biochemistry       Date:  1992-10-13       Impact factor: 3.162

9.  Mechanism of assembly of the tyrosyl radical-dinuclear iron cluster cofactor of ribonucleotide reductase.

Authors:  J M Bollinger; D E Edmondson; B H Huynh; J Filley; J R Norton; J Stubbe
Journal:  Science       Date:  1991-07-19       Impact factor: 47.728

10.  Characterization of components of the anaerobic ribonucleotide reductase system from Escherichia coli.

Authors:  R Eliasson; E Pontis; M Fontecave; C Gerez; J Harder; H Jörnvall; M Krook; P Reichard
Journal:  J Biol Chem       Date:  1992-12-15       Impact factor: 5.157

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  26 in total

1.  Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation.

Authors:  Holly H Hogrefe; Connie J Hansen; Bradley R Scott; Kirk B Nielson
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-08       Impact factor: 11.205

2.  Ribonucleotide reductase genes of Bacillus prophages: a refuge to introns and intein coding sequences.

Authors:  V Lazarevic
Journal:  Nucleic Acids Res       Date:  2001-08-01       Impact factor: 16.971

3.  The last common ancestor: what's in a name?

Authors:  Luis Delaye; Arturo Becerra; Antonio Lazcano
Journal:  Orig Life Evol Biosph       Date:  2005-12       Impact factor: 1.950

Review 4.  Posttranslational protein modification in Archaea.

Authors:  Jerry Eichler; Michael W W Adams
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

5.  The cbiS gene of the archaeon Methanopyrus kandleri AV19 encodes a bifunctional enzyme with adenosylcobinamide amidohydrolase and alpha-ribazole-phosphate phosphatase activities.

Authors:  Jesse D Woodson; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2006-06       Impact factor: 3.490

6.  Novel multiprotein complexes identified in the hyperthermophilic archaeon Pyrococcus furiosus by non-denaturing fractionation of the native proteome.

Authors:  Angeli Lal Menon; Farris L Poole; Aleksandar Cvetkovic; Sunia A Trauger; Ewa Kalisiak; Joseph W Scott; Saratchandra Shanmukh; Jeremy Praissman; Francis E Jenney; William R Wikoff; John V Apon; Gary Siuzdak; Michael W W Adams
Journal:  Mol Cell Proteomics       Date:  2008-11-28       Impact factor: 5.911

7.  The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.

Authors:  J D Woodson; R F Peck; M P Krebs; J C Escalante-Semerena
Journal:  J Bacteriol       Date:  2003-01       Impact factor: 3.490

8.  Introns and intein coding sequence in the ribonucleotide reductase genes of Bacillus subtilis temperate bacteriophage SPbeta.

Authors:  V Lazarevic; B Soldo; A Düsterhöft; H Hilbert; C Mauël; D Karamata
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

9.  Ribonucleotide reductases in the twenty-first century.

Authors:  J Stubbe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-17       Impact factor: 11.205

10.  ABC transporter for corrinoids in Halobacterium sp. strain NRC-1.

Authors:  Jesse D Woodson; April A Reynolds; Jorge C Escalante-Semerena
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

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