Literature DB >> 9003483

Microsatellite variation and the differentiation of modern humans.

A Pérez-Lezaun1, F Calafell, E Mateu, D Comas, R Ruiz-Pacheco, J Bertranpetit.   

Abstract

This study presents an analysis of 20 tetranucleotide microsatellites in 16 worldwide human populations representing the major geographic groups. Global Fst values for the 20 microsatellites are indicators of their relative validity as tools in human population genetics. Four different measures of genetic distance (Fst, DSW, delta mu 2 and Rst) have been tested and compared with each other. Neighbor-joining trees have been constructed for all the measures of genetic distance and populations. Measures of genetic distance such as Fst, which does not consider different mutational relationships among alleles and has a known relationship to differentiation by drift, and to some extent DSW, reflect what is known of human evolution, while mutation-based distances such as Rst and delta mu 2 give very different results from those recognized from other sources (genetic or archaeological). When the genetic relationship between human populations is analyzed through allelic frequencies for microsatellites, the choice of distance may be a key issue in the picture obtained of genetic relationships between human populations. The results of the present study suggest that genetic drift played the main role in generating the present distributions of microsatellite alleles and their variation among human populations; the role of mutation must have been less important owing to the time constraint imposed by the small timescale in which most human differentiation has occurred. Moreover, the results support the theory of a recent origin of modern humans, although the existence of strong bottlenecks in the origin of the various human groups seems unlikely.

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Year:  1997        PMID: 9003483     DOI: 10.1007/s004390050299

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  16 in total

1.  Distinctive genetic signatures in the Libyan Jews.

Authors:  N A Rosenberg; E Woolf; J K Pritchard; T Schaap; D Gefel; I Shpirer; U Lavi; B Bonne-Tamir; J Hillel; M W Feldman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

2.  Linkage disequilibrium and allele-frequency distributions for 114 single-nucleotide polymorphisms in five populations.

Authors:  K A Goddard; P J Hopkins; J M Hall; J S Witte
Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

3.  Human population genetic structure and inference of group membership.

Authors:  Michael J Bamshad; Stephen Wooding; W Scott Watkins; Christopher T Ostler; Mark A Batzer; Lynn B Jorde
Journal:  Am J Hum Genet       Date:  2003-01-28       Impact factor: 11.025

4.  Phylogenetic relationship of the populations within and around Japan using 105 short tandem repeat polymorphic loci.

Authors:  Shi-Lin Li; Toshimichi Yamamoto; Takashi Yoshimoto; Rieko Uchihi; Masaki Mizutani; Yukihide Kurimoto; Katsushi Tokunaga; Feng Jin; Yoshinao Katsumata; Naruya Saitou
Journal:  Hum Genet       Date:  2005-11-29       Impact factor: 4.132

5.  Minisatellite MS32 alleles show population specificity among Thai, Chinese, and Japanese.

Authors:  Qing-Hua Yuan; Azusa Tanaka; Richard H Kaszynski; Morio Iino; Tomoko Okuno; Tatsuaki Tsuruyama; Toshimichi Yamamoto; Alec J Jeffreys; Keiji Tamaki
Journal:  J Mol Evol       Date:  2009-01-22       Impact factor: 2.395

6.  Worldwide genetic analysis of the CFTR region.

Authors:  E Mateu; F Calafell; O Lao; B Bonné-Tamir; J R Kidd; A Pakstis; K K Kidd; J Bertranpetit
Journal:  Am J Hum Genet       Date:  2000-12-04       Impact factor: 11.025

7.  When genetic distance matters: measuring genetic differentiation at microsatellite loci in whole-genome scans of recent and incipient mosquito species.

Authors:  R Wang; L Zheng; Y T Touré; T Dandekar; F C Kafatos
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

8.  Evidence for gradients of human genetic diversity within and among continents.

Authors:  David Serre; Svante Pääbo
Journal:  Genome Res       Date:  2004-09       Impact factor: 9.043

9.  Features of evolution and expansion of modern humans, inferred from genomewide microsatellite markers.

Authors:  Lev A Zhivotovsky; Noah A Rosenberg; Marcus W Feldman
Journal:  Am J Hum Genet       Date:  2003-04-10       Impact factor: 11.025

10.  DNA sequence variation in a 3.7-kb noncoding sequence 5' of the CYP1A2 gene: implications for human population history and natural selection.

Authors:  S P Wooding; W S Watkins; M J Bamshad; D M Dunn; R B Weiss; L B Jorde
Journal:  Am J Hum Genet       Date:  2002-08-09       Impact factor: 11.025

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