Literature DB >> 8994848

Complete genome sequences of cellular life forms: glimpses of theoretical evolutionary genomics.

E V Koonin1, A R Mushegian.   

Abstract

The availability of complete genome sequences of cellular life forms creates the opportunity to explore the functional content of the genomes and evolutionary relationships between them at a new qualitative level. With the advent of these sequences, the construction of a minimal gene set sufficient for sustaining cellular life and reconstruction of the genome of the last common ancestor of bacteria, eukaryotes, and archaea become realistic, albeit challenging, research projects. A version of the minimal gene set for modern-type cellular life derived by comparative analysis of two bacterial genomes, those of Haemophilus influenzae and Mycoplasma genitalium, consists of approximately 250 genes. A comparison of the protein sequences encoded in these genes with those of the proteins encoded in the complete yeast genome suggests that the last common ancestor of all extant life might have had an RNA genome.

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Year:  1996        PMID: 8994848     DOI: 10.1016/s0959-437x(96)80032-3

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  19 in total

1.  Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.

Authors:  Dmitri M Krylov; Yuri I Wolf; Igor B Rogozin; Eugene V Koonin
Journal:  Genome Res       Date:  2003-10       Impact factor: 9.043

2.  Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale.

Authors:  Odile Lecompte; Raymond Ripp; Jean-Claude Thierry; Dino Moras; Olivier Poch
Journal:  Nucleic Acids Res       Date:  2002-12-15       Impact factor: 16.971

Review 3.  Comparative genomics: methods and applications.

Authors:  Bernhard Haubold; Thomas Wiehe
Journal:  Naturwissenschaften       Date:  2004-06-25

4.  Towards completion of the Earth's proteome.

Authors:  Carolina Perez-Iratxeta; Gareth Palidwor; Miguel A Andrade-Navarro
Journal:  EMBO Rep       Date:  2007-12       Impact factor: 8.807

5.  Origin of the metazoan phyla: molecular clocks confirm paleontological estimates.

Authors:  F J Ayala; A Rzhetsky; F J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

6.  Positionally cloned human disease genes: patterns of evolutionary conservation and functional motifs.

Authors:  A R Mushegian; D E Bassett; M S Boguski; P Bork; E V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-27       Impact factor: 11.205

7.  Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach.

Authors:  E V Koonin; Y I Wolf; L Aravind
Journal:  Genome Res       Date:  2001-02       Impact factor: 9.043

8.  A Proposal of the Ur-proteome.

Authors:  Miryam Palacios-Pérez; Fernando Andrade-Díaz; Marco V José
Journal:  Orig Life Evol Biosph       Date:  2017-11-10       Impact factor: 1.950

9.  Darwinian evolution in the light of genomics.

Authors:  Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2009-02-12       Impact factor: 16.971

10.  Evolution of bacterial phosphoglycerate mutases: non-homologous isofunctional enzymes undergoing gene losses, gains and lateral transfers.

Authors:  Jeremy M Foster; Paul J Davis; Sylvine Raverdy; Marion H Sibley; Elisabeth A Raleigh; Sanjay Kumar; Clotilde K S Carlow
Journal:  PLoS One       Date:  2010-10-26       Impact factor: 3.240

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