Literature DB >> 8990397

Evidence for light/redox-regulated splicing of psbA pre-RNAs in Chlamydomonas chloroplasts.

N N Deshpande1, Y Bao, D L Herrin.   

Abstract

Efficient splicing in vivo of most self-splicing group I introns is believed to require proteins, raising the possibility that splicing could be regulated; however, examples of such regulation have been lacking. The Chlamydomonas reinhardtii chloroplast psbA gene contains four large group I introns that self-splice efficiently in vitro, but only under nonphysiological conditions. The psbA gene encodes the D1 protein of photosystem II, which is synthesized at very high rates in the light in order to replace photodamaged protein. We show that psbA pre-mRNAs, containing one or more introns, accumulate in wild-type cells in the dark, apparently due to rate-limited splicing. Analysis of the pre-RNAs indicates that splicing of the four introns does not follow a strict order. Exposure of cells to light induced rapid (15-20 min) decreases in precursor levels of approximately 3-5-fold (depending on the intron), which were accompanied by transient increases in free intron levels. Because light also stimulated psbA transcription approximately 2-fold over the same period, the data suggests that light increases the splicing efficiency of psbA introns approximately 6-10-fold. Similar estimates of the extent of light stimulation were obtained by analyzing precursor decay rates in the presence of actinomycin D. The effect of light is specific for psbA introns, because levels of unspliced 23S pre-RNA did not decrease. The light-induced increase in psbA pre-RNA processing was abolished by inhibitors of photosynthetic electron transport, but not by the ATP synthesis inhibitor, carbonylcyanide m-chlorophenylhydrazone, which actually promoted pre-RNA processing in the dark. Finally, nonphotosynthetic mutants, including the tscA-lacking photosystem I mutant, H13, did not show evidence of light-stimulated RNA processing. However, the light response was restored in photosynthetic transformants of H13 that had been complemented with the tscA gene. These data suggest strongly that light coordinately stimulates splicing of all four psbA introns. Moreover, they demonstrate that this response to light is mediated by photosynthetic electron transport. The implications of these results for the regulation of psbA gene expression are discussed.

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Year:  1997        PMID: 8990397      PMCID: PMC1369460     

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  36 in total

1.  In vitro self-splicing reactions of the chloroplast group I intron Cr.LSU from Chlamydomonas reinhardtii and in vivo manipulation via gene-replacement.

Authors:  A J Thompson; D L Herrin
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

2.  Rapid, reversible staining of northern blots prior to hybridization.

Authors:  D L Herrin; G W Schmidt
Journal:  Biotechniques       Date:  1988-03       Impact factor: 1.993

Review 3.  Structure and activities of group II introns.

Authors:  F Michel; J L Ferat
Journal:  Annu Rev Biochem       Date:  1995       Impact factor: 23.643

4.  Nucleotide sequence and secondary structure of the chloroplast group I intron Cr.psbA-2: novel features of this self-splicing ribozyme.

Authors:  Y Bao; D L Herrin
Journal:  Nucleic Acids Res       Date:  1993-04-11       Impact factor: 16.971

5.  Genomic sequencing.

Authors:  G M Church; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1984-04       Impact factor: 11.205

6.  RNA splicing in Neurospora mitochondria. Defective splicing of mitochondrial mRNA precursors in the nuclear mutant cyt18-1.

Authors:  R A Collins; A M Lambowitz
Journal:  J Mol Biol       Date:  1985-08-05       Impact factor: 5.469

7.  The atpF group-II intron-containing gene from spinach chloroplasts is not spliced in transgenic Chlamydomonas chloroplasts.

Authors:  N N Deshpande; M Hollingsworth; D L Herrin
Journal:  Curr Genet       Date:  1995-07       Impact factor: 3.886

8.  Mutations affecting RNA splicing and the interaction of gene expression of the yeast mitochondrial loci cob and oxi-3.

Authors:  G J Van Ommen; P H Boer; G S Groot; M De Haan; E Roosendaal; L A Grivell; A Haid; R J Schweyen
Journal:  Cell       Date:  1980-05       Impact factor: 41.582

9.  Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins.

Authors:  A Danon; S P Mayfield
Journal:  EMBO J       Date:  1991-12       Impact factor: 11.598

10.  ADP-dependent phosphorylation regulates RNA-binding in vitro: implications in light-modulated translation.

Authors:  A Danon; S P Mayfield
Journal:  EMBO J       Date:  1994-05-01       Impact factor: 11.598

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  16 in total

1.  Mobile self-splicing group I introns from the psbA gene of Chlamydomonas reinhardtii: highly efficient homing of an exogenous intron containing its own promoter.

Authors:  O W Odom; S P Holloway; N N Deshpande; J Lee; D L Herrin
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

2.  Mutagenesis of a light-regulated psbA intron reveals the importance of efficient splicing for photosynthetic growth.

Authors:  Jaesung Lee; David L Herrin
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

3.  Genetic organization of the psbAD region in phages infecting marine Synechococcus strains.

Authors:  Andrew Millard; Martha R J Clokie; David A Shub; Nicholas H Mann
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-19       Impact factor: 11.205

4.  The redox state regulates RNA degradation in the chloroplast of Chlamydomonas reinhardtii.

Authors:  M L Salvador; U Klein
Journal:  Plant Physiol       Date:  1999-12       Impact factor: 8.340

5.  Assessing the relative importance of light and the circadian clock in controlling chloroplast translation in Chlamydomonas reinhardtii.

Authors:  Jaesung Lee; David L Herrin
Journal:  Photosynth Res       Date:  2002       Impact factor: 3.573

6.  High-throughput sequencing of the chloroplast and mitochondrion of Chlamydomonas reinhardtii to generate improved de novo assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates.

Authors:  Sean D Gallaher; Sorel T Fitz-Gibbon; Daniela Strenkert; Samuel O Purvine; Matteo Pellegrini; Sabeeha S Merchant
Journal:  Plant J       Date:  2018-01-07       Impact factor: 6.417

7.  Requirement for cytoplasmic protein synthesis during circadian peaks of transcription of chloroplast-encoded genes in Chlamydomonas.

Authors:  R Kawazoe; S Hwang; D L Herrin
Journal:  Plant Mol Biol       Date:  2000-12       Impact factor: 4.076

Review 8.  Mobile self-splicing introns and inteins as environmental sensors.

Authors:  Marlene Belfort
Journal:  Curr Opin Microbiol       Date:  2017-05-05       Impact factor: 7.934

9.  Chloroplast RNA processing and stability.

Authors:  David L Herrin; Jöerg Nickelsen
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

10.  Light control of nuclear gene mRNA abundance and translation in tobacco.

Authors:  Li Tang; Sumana Bhat; Marie E Petracek
Journal:  Plant Physiol       Date:  2003-12       Impact factor: 8.340

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