Literature DB >> 8986647

Maximum-entropy three-dimensional reconstruction with deconvolution of the contrast transfer function: a test application with adenovirus.

U Skoglund1, L G Ofverstedt, R M Burnett, G Bricogne.   

Abstract

We have developed an objective, quantitative, and general algorithm to improve the fidelity of three-dimensional reconstructions made from electron micrographs while at the same time filtering much of the noise present in the recorded data. The new technique is called constrained maximum entropy tomography (COMET). The essence of the method is that it will produce the most featureless reconstruction that fits the projection data within their observational accuracy. In particular, the COMET procedure will minimise the detrimental effects of errors in the measured data and deconvolute the effects of the contrast transfer function. An objective test has been performed using COMET on a conventional image reconstruction obtained from cryo-electron micrographs of adenovirus. The density for hexon, the major coat protein of the virus, which is known to high resolution from X-ray crystallography, provided a known high-resolution control. The COMET reconstruction is in considerably better agreement with the crystallographic electron density than the original reconstruction, throughout the entire resolution range.

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Year:  1996        PMID: 8986647     DOI: 10.1006/jsbi.1996.0081

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  21 in total

Review 1.  Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron micrographs.

Authors:  T S Baker; N H Olson; S D Fuller
Journal:  Microbiol Mol Biol Rev       Date:  1999-12       Impact factor: 11.056

2.  In situ transcription and splicing in the Balbiani ring 3 gene.

Authors:  I Wetterberg; J Zhao; S Masich; L Wieslander; U Skoglund
Journal:  EMBO J       Date:  2001-05-15       Impact factor: 11.598

3.  Comparison of maximum entropy and filtered back-projection methods to reconstruct rapid-scan EPR images.

Authors:  Mark Tseitlin; Amarjot Dhami; Sandra S Eaton; Gareth R Eaton
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

Review 4.  3D electron microscopy of biological nanomachines: principles and applications.

Authors:  C O S Sorzano; S Jonic; M Cottevieille; E Larquet; N Boisset; S Marco
Journal:  Eur Biophys J       Date:  2007-07-05       Impact factor: 1.733

5.  Electron lambda-tomography.

Authors:  Eric Todd Quinto; Ulf Skoglund; Ozan Oktem
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-02       Impact factor: 11.205

6.  Structural features of the tmRNA-ribosome interaction.

Authors:  Elizaveta Y Bugaeva; Serhiy Surkov; Andrey V Golovin; Lars-Göran Ofverstedt; Ulf Skoglund; Leif A Isaksson; Alexey A Bogdanov; Olga V Shpanchenko; Olga A Dontsova
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

7.  Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution.

Authors:  Julio Kovacs; Junha Song; Manfred Auer; Jing He; Wade Hunter; Willy Wriggers
Journal:  J Chem Inf Model       Date:  2020-03-19       Impact factor: 4.956

8.  The antibody zalutumumab inhibits epidermal growth factor receptor signaling by limiting intra- and intermolecular flexibility.

Authors:  Jeroen J Lammerts van Bueren; Wim K Bleeker; Annika Brännström; Anne von Euler; Magnus Jansson; Matthias Peipp; Tanja Schneider-Merck; Thomas Valerius; Jan G J van de Winkel; Paul W H I Parren
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-21       Impact factor: 11.205

9.  Nephrin promotes cell-cell adhesion through homophilic interactions.

Authors:  Jamshid Khoshnoodi; Kristmundur Sigmundsson; Lars-Göran Ofverstedt; Ulf Skoglund; Björn Obrink; Jorma Wartiovaara; Karl Tryggvason
Journal:  Am J Pathol       Date:  2003-12       Impact factor: 4.307

10.  The CEACAM1 N-terminal Ig domain mediates cis- and trans-binding and is essential for allosteric rearrangements of CEACAM1 microclusters.

Authors:  Esther Klaile; Olga Vorontsova; Kristmundur Sigmundsson; Mario M Müller; Bernhard B Singer; Lars-Göran Ofverstedt; Stina Svensson; Ulf Skoglund; Björn Obrink
Journal:  J Cell Biol       Date:  2009-11-16       Impact factor: 10.539

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