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Literature DB >> 8984010

DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences.

T Pélissier¹, S Tutois, S Tourmente, J M Deragon, G Picard.

Abstract

An analysis of Arabidopsis thaliana heterochromatic regions revealed that genomic sequences immediately flanking the major 180 bp satellite are essentially made of middle repetitive sequences and that most of these sequences correspond to defective Athila retroelements. Using YAC and lambda clones, we evaluated the distribution of Athila elements in the Arabidopsis genome and showed that, despite the presence of numerous euchromatic copies, these elements are especially concentrated in or near heterochromatic regions. Sequencing of the various DNA transitions between satellite and Athila repeats provides strong evidence that most of the heterochromatic elements retrotransposed directly into 180 bp satellite clusters.

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Year: 1996 PMID： 8984010 DOI： 10.1007/bf00054621

Source DB: PubMed Journal: Genetica ISSN： 0016-6707 Impact factor: 1.082

36 in total

Review 1. Functional elements in Drosophila melanogaster heterochromatin.

Authors: M Gatti; S Pimpinelli
Journal: Annu Rev Genet Date: 1992 Impact factor: 16.830

2. Nucleotide sequence of the 5.8S and 25S rRNA genes and of the internal transcribed spacers from Arabidopsis thaliana.

Authors: I Unfried; P Gruendler
Journal: Nucleic Acids Res Date: 1990-07-11 Impact factor: 16.971

3. The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. III. Element abundances in heterochromatin.

Authors: B Charlesworth; P Jarne; S Assimacopoulos
Journal: Genet Res Date: 1994-12 Impact factor: 1.588

4. Heterochromatic regions in different Drosophila melanogaster stocks contain similar arrangements of moderate repeats with inserted copia-like elements (MDG1).

Authors: M D Balakireva; V A Gvozdev
Journal: Chromosoma Date: 1989-08 Impact factor: 4.316

5. Isolation and characterization of plant genes coding for acetolactate synthase, the target enzyme for two classes of herbicides.

Authors: B J Mazur; C F Chui; J K Smith
Journal: Plant Physiol Date: 1987-12 Impact factor: 8.340

6. DNA sequencing with chain-terminating inhibitors.

Authors: F Sanger; S Nicklen; A R Coulson
Journal: Proc Natl Acad Sci U S A Date: 1977-12 Impact factor: 11.205

7. Athila, a new retroelement from Arabidopsis thaliana.

Authors: T Pélissier; S Tutois; J M Deragon; S Tourmente; S Genestier; G Picard
Journal: Plant Mol Biol Date: 1995-11 Impact factor: 4.076

8. Transposable elements are stable structural components of Drosophila melanogaster heterochromatin.

Authors: S Pimpinelli; M Berloco; L Fanti; P Dimitri; S Bonaccorsi; E Marchetti; R Caizzi; C Caggese; M Gatti
Journal: Proc Natl Acad Sci U S A Date: 1995-04-25 Impact factor: 11.205

9. Characterization of highly repetitive sequences of Arabidopsis thaliana.

Authors: C R Simoens; J Gielen; M Van Montagu; D Inzé
Journal: Nucleic Acids Res Date: 1988-07-25 Impact factor: 16.971

10. Structure and genomic organization of proretrovirus-like elements partially eliminated from the somatic genome of Ascaris lumbricoides.

Authors: P Aeby; A Spicher; Y de Chastonay; F Müller; H Tobler
Journal: EMBO J Date: 1986-12-01 Impact factor: 11.598

39 in total

9. Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

Authors: Michael D Bennett; Ilia J Leitch; H James Price; J Spencer Johnston
Journal: Ann Bot Date: 2003-04 Impact factor: 4.357

10. A tandem repetitive sequence located in the centromeric region of common wheat (Triticum aestivum) chromosomes.

Authors: M Kishii; K Nagaki; H Tsujimoto
Journal: Chromosome Res Date: 2001 Impact factor: 5.239

DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences.

Review 1. Functional elements in Drosophila melanogaster heterochromatin.

2. Nucleotide sequence of the 5.8S and 25S rRNA genes and of the internal transcribed spacers from Arabidopsis thaliana.

3. The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. III. Element abundances in heterochromatin.

4. Heterochromatic regions in different Drosophila melanogaster stocks contain similar arrangements of moderate repeats with inserted copia-like elements (MDG1).

5. Isolation and characterization of plant genes coding for acetolactate synthase, the target enzyme for two classes of herbicides.

6. DNA sequencing with chain-terminating inhibitors.

7. Athila, a new retroelement from Arabidopsis thaliana.

8. Transposable elements are stable structural components of Drosophila melanogaster heterochromatin.

9. Characterization of highly repetitive sequences of Arabidopsis thaliana.

10. Structure and genomic organization of proretrovirus-like elements partially eliminated from the somatic genome of Ascaris lumbricoides.

Review 1. Transposable element contributions to plant gene and genome evolution.

Review 2. Comparative sequence analysis of plant nuclear genomes:m microcolinearity and its many exceptions.

3. Endogenous targets of transcriptional gene silencing in Arabidopsis.

4. Sequence organization of barley centromeres.

5. Retrotransposon evolution in diverse plant genomes.

6. Structural analysis and physical mapping of a pericentromeric region of chromosome 5 of Arabidopsis thaliana.

7. Diverse patterns of the tandem repeats organization in rye chromosomes.

8. Genomic localization of AtRE1 and AtRE2, copia-type retrotransposons, in natural variants of Arabidopsis thaliana.

9. Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative estimate of approximately 125 Mb.

10. A tandem repetitive sequence located in the centromeric region of common wheat (Triticum aestivum) chromosomes.