Literature DB >> 8976558

NMR assignments and relaxation studies of Thiobacillus versutus ferrocytochrome c-550 indicate the presence of a highly mobile 13-residues long C-terminal tail.

M Ubbink1, M Pfuhl, J van der Oost, A Berg, G W Canters.   

Abstract

Cytochrome c-550 of Thiobacillus versutus functions as an electron transfer protein in a chain of redox proteins that enables T. versutus to grow on methylamine. It is a single-heme protein of 134 residues, related to mitochondrial cytochrome c. Cytochrome c-550, as well as several other bacterial c2-type cytochromes, contain a C-terminal extension of 13-16 amino acids of unknown function, compared to mitochondrial cytochrome c. NMR experiments were performed to obtain structural and dynamic information on the protein in solution. For this purpose, T. versutus cytochrome c-550 was labeled with 15N and 13C using 13C-methanol grown Paracoccus denitrificans as a host for heterologous expression. NMR assignments were obtained for the 1H, 15N, and 13C nuclei in the backbone and the beta-positions of the protein and the secondary structure was determined. 15N-relaxation studies were performed to characterize the dynamic properties of the protein. The results indicate that the main part of T. versutus ferrocytochrome c-550 exists in solution as a rigid, well-ordered molecule with a secondary structure that is very similar to that of P. denitrificans cytochrome c-550, as observed in crystals. The C-terminal extension, however, is unstructured and highly mobile. The possible origin and function of the extension are discussed.

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Year:  1996        PMID: 8976558      PMCID: PMC2143319          DOI: 10.1002/pro.5560051212

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  26 in total

1.  Loop mobility in a four-helix-bundle protein: 15N NMR relaxation measurements on human interleukin-4.

Authors:  C Redfield; J Boyd; L J Smith; R A Smith; C M Dobson
Journal:  Biochemistry       Date:  1992-11-03       Impact factor: 3.162

2.  Studies on the utilization of nitrate by Micrococcus denitrificans.

Authors:  J P CHANG; J G MORRIS
Journal:  J Gen Microbiol       Date:  1962-10

3.  Crystallization and X-ray structure determination of cytochrome c2 from Rhodobacter sphaeroides in three crystal forms.

Authors:  H L Axelrod; G Feher; J P Allen; A J Chirino; M W Day; B T Hsu; D C Rees
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-07-01

4.  A method for introduction of unmarked mutations in the genome of Paracoccus denitrificans: construction of strains with multiple mutations in the genes encoding periplasmic cytochromes c550, c551i, and c553i.

Authors:  R J Van Spanning; C W Wansell; W N Reijnders; N Harms; J Ras; L F Oltmann; A H Stouthamer
Journal:  J Bacteriol       Date:  1991-11       Impact factor: 3.490

5.  X-Ray structure of the cytochrome c2 isolated from Paracoccus denitrificans refined to 1.7-A resolution.

Authors:  M M Benning; T E Meyer; H M Holden
Journal:  Arch Biochem Biophys       Date:  1994-05-01       Impact factor: 4.013

6.  The terminal oxidases of Paracoccus denitrificans.

Authors:  J W de Gier; M Lübben; W N Reijnders; C A Tipker; D J Slotboom; R J van Spanning; A H Stouthamer; J van der Oost
Journal:  Mol Microbiol       Date:  1994-07       Impact factor: 3.501

7.  Paracoccus denitrificans cytochrome c1 gene replacement mutants.

Authors:  E Gerhus; P Steinrücke; B Ludwig
Journal:  J Bacteriol       Date:  1990-05       Impact factor: 3.490

8.  Solution structure and dynamics of ras p21.GDP determined by heteronuclear three- and four-dimensional NMR spectroscopy.

Authors:  P J Kraulis; P J Domaille; S L Campbell-Burk; T Van Aken; E D Laue
Journal:  Biochemistry       Date:  1994-03-29       Impact factor: 3.162

9.  1H, 13C and 15N chemical shift referencing in biomolecular NMR.

Authors:  D S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; J L Markley; B D Sykes
Journal:  J Biomol NMR       Date:  1995-09       Impact factor: 2.835

10.  The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data.

Authors:  D S Wishart; B D Sykes
Journal:  J Biomol NMR       Date:  1994-03       Impact factor: 2.835

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  2 in total

1.  Complete 1H, 15N and 13C assignment of the functional domain of paracoccus denitrificans cytochrome c552 in the reduced state.

Authors:  P Pristovsek; C Lücke; B Reincke; F Löhr; B Ludwig; H Rüterjans
Journal:  J Biomol NMR       Date:  2000-04       Impact factor: 2.835

2.  Comparison of the backbone dynamics of wild-type Hydrogenobacter thermophilus cytochrome c(552) and its b-type variant.

Authors:  Kaeko Tozawa; Stuart J Ferguson; Christina Redfield; Lorna J Smith
Journal:  J Biomol NMR       Date:  2015-05-08       Impact factor: 2.835

  2 in total

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