Literature DB >> 8962468

Control analysis of glycolytic oscillations.

M Bier1, B Teusink, B N Kholodenko, H V Westerhoff.   

Abstract

The principles involved in the control of the frequency of sustained metabolic oscillations are developed in the context of glycolytic oscillations in Saccharomyces cerevisiae. To this purpose, an existing mathematical model that describes the experimentally obtained oscillations was simplified to a core model. Frequency, relative phase, average concentrations and amplitudes of the oscillations were well approximated by writing the two remaining metabolic variables of the core model (representing [ATP] and [hexose]) as harmonic functions of time and by requiring them to fulfill the differential equations. The extent to which an enzyme (-conglomerate) controls the frequency in a sustained oscillation is defined as the log-log derivative of that frequency with respect to enzyme activity. In both the full model and the core model this control of frequency and the control over the average concentrations proved to be distributed over the enzymes. We identified a summation theorem, stating that the sum of such control coefficients over all processes equals unity for frequency and zero for the average concentrations.

Entities:  

Mesh:

Year:  1996        PMID: 8962468     DOI: 10.1016/s0301-4622(96)02195-3

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  14 in total

1.  How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.

Authors:  M Bier; B M Bakker; H V Westerhoff
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Control analysis for autonomously oscillating biochemical networks.

Authors:  Karin A Reijenga; Hans V Westerhoff; Boris N Kholodenko; Jacky L Snoep
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

3.  An introduction to dynamical systems.

Authors:  Eric A Sobie
Journal:  Sci Signal       Date:  2011-09-13       Impact factor: 8.192

4.  Control of glycolytic dynamics by hexose transport in Saccharomyces cerevisiae.

Authors:  K A Reijenga; J L Snoep; J A Diderich; H W van Verseveld; H V Westerhoff; B Teusink
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

5.  Transduction of intracellular and intercellular dynamics in yeast glycolytic oscillations.

Authors:  J Wolf; J Passarge; O J Somsen; J L Snoep; R Heinrich; H V Westerhoff
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

6.  Global self-regulation of the cellular metabolic structure.

Authors:  Ildefonso M De la Fuente; Fernando Vadillo; Alberto Luís Pérez-Samartín; Martín-Blas Pérez-Pinilla; Joseba Bidaurrazaga; Antonio Vera-López
Journal:  PLoS One       Date:  2010-03-02       Impact factor: 3.240

Review 7.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

Review 8.  A systems biology approach to discovering pathway signaling dysregulation in metastasis.

Authors:  Robert Clarke; Pavel Kraikivski; Brandon C Jones; Catherine M Sevigny; Surojeet Sengupta; Yue Wang
Journal:  Cancer Metastasis Rev       Date:  2020-08-10       Impact factor: 9.264

9.  Robustness in regulatory interaction networks. A generic approach with applications at different levels: physiologic, metabolic and genetic.

Authors:  Jacques Demongeot; Hedi Ben Amor; Adrien Elena; Pierre Gillois; Mathilde Noual; Sylvain Sené
Journal:  Int J Mol Sci       Date:  2009-11-20       Impact factor: 6.208

Review 10.  Self-Organization and Information Processing: From Basic Enzymatic Activities to Complex Adaptive Cellular Behavior.

Authors:  Ildefonso M De la Fuente; Luis Martínez; Jose Carrasco-Pujante; Maria Fedetz; José I López; Iker Malaina
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.