Literature DB >> 8947573

NMR solution structure of Cu(I) rusticyanin from Thiobacillus ferrooxidans: structural basis for the extreme acid stability and redox potential.

M V Botuyan1, A Toy-Palmer, J Chung, R C Blake, P Beroza, D A Case, H J Dyson.   

Abstract

The solution structure of the Cu(I) form of the rusticyanin from Thiobacillus ferrooxidans has been calculated from a total of 1979 distance and dihedral angle constraints derived from 1H, 13C and 15N NMR spectra. The structures reveal two beta-sheets, one of six strands and one of seven strands that are tightly packed in a beta-barrel or beta-sandwich arrangement, and a short helix that extends on the outside of one of the sheets to form a second hydrophobic core. The copper coordination sphere is composed of the standard type I ligands (His2CysMet) in a distorted tetrahedral arrangement. The copper-binding site is located within a hydrophobic region at one end of the molecule, surrounded by a number of aromatic rings and hydrophobic residues. This configuration probably contributes to the acid stability of the copper site, since close association of the aromatic rings with the histidine ligands would sterically hinder their dissociation from the copper. An electrostatic analysis based on a comparison of the structures of rusticyanin and French bean plastocyanin shows that factors determining the high redox potential of rusticyanin include contributions from charged side-chains and from the disposition of backbone peptide dipoles, particularly in the 81 to 86 region of the sequence and the ligand cysteine residue. These interactions should also contribute to the acid stability by inhibiting protonation of His143.

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Year:  1996        PMID: 8947573     DOI: 10.1006/jmbi.1996.0613

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  15 in total

1.  An unconventional copper protein required for cytochrome c oxidase respiratory function under extreme acidic conditions.

Authors:  Cindy Castelle; Marianne Ilbert; Pascale Infossi; Gisèle Leroy; Marie-Thérèse Giudici-Orticoni
Journal:  J Biol Chem       Date:  2010-05-03       Impact factor: 5.157

2.  The 1.4 A resolution structure of Paracoccus pantotrophus pseudoazurin.

Authors:  Shabir Najmudin; Sofia R Pauleta; Isabel Moura; Maria J Romão
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-25

3.  Structural analysis of the HiPIP from the acidophilic bacteria: Acidithiobacillus ferrooxidans.

Authors:  Matthieu Nouailler; Patrice Bruscella; Elisabeth Lojou; Régine Lebrun; Violaine Bonnefoy; Françoise Guerlesquin
Journal:  Extremophiles       Date:  2006-04-08       Impact factor: 2.395

4.  The Multicenter Aerobic Iron Respiratory Chain of Acidithiobacillus ferrooxidans Functions as an Ensemble with a Single Macroscopic Rate Constant.

Authors:  Ting-Feng Li; Richard G Painter; Bhupal Ban; Robert C Blake
Journal:  J Biol Chem       Date:  2015-06-03       Impact factor: 5.157

Review 5.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

6.  An NMR view of the unfolding process of rusticyanin: Structural elements that maintain the architecture of a beta-barrel metalloprotein.

Authors:  Luis A Alcaraz; Beatriz Jiménez; José María Moratal; Antonio Donaire
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

Review 7.  Inner- and outer-sphere metal coordination in blue copper proteins.

Authors:  Jeffrey J Warren; Kyle M Lancaster; John H Richards; Harry B Gray
Journal:  J Inorg Biochem       Date:  2012-05-09       Impact factor: 4.155

8.  Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials.

Authors:  Ryan G Hadt; Ning Sun; Nicholas M Marshall; Keith O Hodgson; Britt Hedman; Yi Lu; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

Review 9.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

10.  In silico classification of proteins from acidic and neutral cytoplasms.

Authors:  Yaping Fang; C Russell Middaugh; Jianwen Fang
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

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