Literature DB >> 8946321

Automatic sorting of multiple unit neuronal signals in the presence of anisotropic and non-Gaussian variability.

M S Fee1, P P Mitra, D Kleinfeld.   

Abstract

Neuronal noise sources and systematic variability in the shape of a spike limit the ability to sort multiple unit waveforms recorded from nervous tissue into their single neuron constituents. Here we present a procedure to efficiently sort spikes in the presence of noise that is anisotropic, i.e., dominated by particular frequencies, and whose amplitude distribution may be non-Gaussian, such as occurs when spike waveforms are a function of interspike interval. Our algorithm uses a hierarchical clustering scheme. First, multiple unit records are sorted into an overly large number of clusters by recursive bisection. Second, these clusters are progressively aggregated into a minimal set of putative single units based on both similarities of spike shape as well as the statistics of spike arrival times, such as imposed by the refractory period. We apply the algorithm to waveforms recorded with chronically implanted micro-wire stereotrodes from neocortex of behaving rat. Natural extension of the algorithm may be used to cluster spike waveforms from records with many input channels, such as those obtained with tetrodes and multiple site optical techniques.

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Year:  1996        PMID: 8946321     DOI: 10.1016/S0165-0270(96)00050-7

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  105 in total

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2.  Modulation of spike timing by sensory deprivation during induction of cortical map plasticity.

Authors:  Tansu Celikel; Vanessa A Szostak; Daniel E Feldman
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3.  Diode probes for spatiotemporal optical control of multiple neurons in freely moving animals.

Authors:  Eran Stark; Tibor Koos; György Buzsáki
Journal:  J Neurophysiol       Date:  2012-04-11       Impact factor: 2.714

4.  Friction-based stabilization of juxtacellular recordings in freely moving rats.

Authors:  Lucas Herfst; Andrea Burgalossi; Kurt Haskic; John J Tukker; Martin Schmidt; Michael Brecht
Journal:  J Neurophysiol       Date:  2012-04-18       Impact factor: 2.714

5.  Heterogeneous response dynamics in retinal ganglion cells: the interplay of predictive coding and adaptation.

Authors:  Sheila Nirenberg; Illya Bomash; Jonathan W Pillow; Jonathan D Victor
Journal:  J Neurophysiol       Date:  2010-03-31       Impact factor: 2.714

6.  Distinct recurrent versus afferent dynamics in cortical visual processing.

Authors:  Kimberly Reinhold; Anthony D Lien; Massimo Scanziani
Journal:  Nat Neurosci       Date:  2015-10-26       Impact factor: 24.884

7.  Temporal and rate code analysis of responses to low-frequency components in the bird's own song by song system neurons.

Authors:  Makoto Fukushima; Peter L Rauske; Daniel Margoliash
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2015-08-30       Impact factor: 1.836

8.  Responses of V1 neurons to two-dimensional hermite functions.

Authors:  Jonathan D Victor; Ferenc Mechler; Michael A Repucci; Keith P Purpura; Tatyana Sharpee
Journal:  J Neurophysiol       Date:  2005-09-07       Impact factor: 2.714

9.  Automated spike sorting using density grid contour clustering and subtractive waveform decomposition.

Authors:  Carlos Vargas-Irwin; John P Donoghue
Journal:  J Neurosci Methods       Date:  2007-04-12       Impact factor: 2.390

Review 10.  Improving data quality in neuronal population recordings.

Authors:  Kenneth D Harris; Rodrigo Quian Quiroga; Jeremy Freeman; Spencer L Smith
Journal:  Nat Neurosci       Date:  2016-08-26       Impact factor: 24.884

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