Literature DB >> 8931145

Characterization of the S1 binding site of the glutamic acid-specific protease from Streptomyces griseus.

H R Stennicke1, J J Birktoft, K Breddam.   

Abstract

The glutamic acid-specific protease from Streptomyces griseus (SGPE) is an 18.4-kDa serine protease with a distinct preference for Glu in the P1 position. Other enzymes characterized by a strong preference for negatively charged residues in the P1 position, e.g., interleukin-1 beta converting enzyme (ICE), use Arg or Lys residues as counterions within the S1 binding site. However, in SGPE, this function is contributed by a His residue (His 213) and two Ser residues (Ser 192 and S216). It is demonstrated that proSGPE is activated autocatalytically and dependent on the presence of a Glu residue in the -1 position. Based on this observation, the importance of the individual S1 residues is evaluated considering that enzymes unable to recognize a Glu in the P1 position will not be activated. Among the residues constituting the S1 binding site, it is demonstrated that His 213 and Ser 192 are essential for recognition of Glu in the P1 position, whereas Ser 216 is less important for catalysis out has an influence on stabilization of the ground state. From the three-dimensional structure, it appears that His 213 is linked to two other His residues (His 199 and His 228), forming a His triad extending from the S1 binding site to the back of the enzyme. This hypothesis has been tested by substitution of His 199 and His 228 with other amino acid residues. The catalytic parameters obtained with the mutant enzymes, as well as the pH dependence, do not support this theory; rather, it appears that His 199 is responsible for orienting His 213 and that His 228 has no function associated with the recognition of Glu in P1.

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Year:  1996        PMID: 8931145      PMCID: PMC2143298          DOI: 10.1002/pro.5560051113

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  22 in total

1.  The relationship between molecular structure and transformation efficiency of some S. aureus plasmids isolated from B. subtilis.

Authors:  U Canosi; G Morelli; T A Trautner
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Review 2.  Cysteine proteases of positive strand RNA viruses and chymotrypsin-like serine proteases. A distinct protein superfamily with a common structural fold.

Authors:  A E Gorbalenya; A P Donchenko; V M Blinov; E V Koonin
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Authors:  J L Silen; C N McGrath; K R Smith; D A Agard
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4.  A simplification of the protein assay method of Lowry et al. which is more generally applicable.

Authors:  G L Peterson
Journal:  Anal Biochem       Date:  1977-12       Impact factor: 3.365

5.  Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases.

Authors:  D C Shields; P M Sharp
Journal:  Nucleic Acids Res       Date:  1987-10-12       Impact factor: 16.971

6.  On the size of the active site in proteases. I. Papain.

Authors:  I Schechter; A Berger
Journal:  Biochem Biophys Res Commun       Date:  1967-04-20       Impact factor: 3.575

7.  Structure and mechanism of interleukin-1 beta converting enzyme.

Authors:  K P Wilson; J A Black; J A Thomson; E E Kim; J P Griffith; M A Navia; M A Murcko; S P Chambers; R A Aldape; S A Raybuck
Journal:  Nature       Date:  1994-07-28       Impact factor: 49.962

8.  Staphylococcal protease: a proteolytic enzyme specific for glutamoyl bonds.

Authors:  J Houmard; G R Drapeau
Journal:  Proc Natl Acad Sci U S A       Date:  1972-12       Impact factor: 11.205

9.  Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications.

Authors:  J F Bazan; R J Fletterick
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

10.  Analysis of prepro-alpha-lytic protease expression in Escherichia coli reveals that the pro region is required for activity.

Authors:  J L Silen; D Frank; A Fujishige; R Bone; D A Agard
Journal:  J Bacteriol       Date:  1989-03       Impact factor: 3.490

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  7 in total

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Review 2.  Spore-specific modification of DNA-dependent RNA polymerase alpha subunit in streptomycetes--a new model of transcription regulation.

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3.  Internally quenched fluorescent peptide substrates disclose the subsite preferences of human caspases 1, 3, 6, 7 and 8.

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4.  The specificity of carboxypeptidase Y may be altered by changing the hydrophobicity of the S'1 binding pocket.

Authors:  S B Sørensen; K Breddam
Journal:  Protein Sci       Date:  1997-10       Impact factor: 6.725

5.  An intermolecular salt bridge linking substrate binding and P1 substrate specificity switch of arterivirus 3C-like proteases.

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Journal:  Comput Struct Biotechnol J       Date:  2022-06-30       Impact factor: 6.155

6.  Structural insights into the role of the N-terminus in the activation and function of extracellular serine protease from Staphylococcus epidermidis.

Authors:  Kartik Manne; Sthanam V L Narayana
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-01-01       Impact factor: 7.652

7.  Glutamyl Endopeptidases: The Puzzle of Substrate Specificity.

Authors:  I V Demidyuk; K N Chukhontseva; S V Kostrov
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  7 in total

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