Literature DB >> 8914274

Genetic tools for selective labeling of proteins with alpha-15N-amino acids.

D S Waugh1.   

Abstract

A collection of genetic tools that can be used to manipulate amino acid metabolism in Escherichia coli is described. The set comprises 21 strains of bacteria, each containing a different genetic defect that is closely linked to a selectable transposon marker. These tools can be used to construct strains of E. coli with ideal genotypes for residue-specific, selective labeling of proteins with nearly any 15N-amino acid. By using strains which have been modified to contain the appropriate genetic lesions to control amino acid biosynthesis, dilution of the isotope by endogenous amino acid biosynthesis and scrambling of the label to other types of residues can be avoided.

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Year:  1996        PMID: 8914274     DOI: 10.1007/bf00211164

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  23 in total

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Journal:  Biochemistry       Date:  1992-06-16       Impact factor: 3.162

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Journal:  J Biochem       Date:  1994-03       Impact factor: 3.387

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Journal:  J Biomol NMR       Date:  1993-03       Impact factor: 2.835

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Journal:  Genetics       Date:  1979-07       Impact factor: 4.562

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Journal:  Eur J Biochem       Date:  1994-10-15

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Authors:  C Abeygunawardana; D J Weber; D N Frick; M J Bessman; A S Mildvan
Journal:  Biochemistry       Date:  1993-12-07       Impact factor: 3.162

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  46 in total

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Authors:  Maria Victoria E Botuyan; Yves Nominé; Xiaochun Yu; Nenad Juranic; Slobodan Macura; Junjie Chen; Georges Mer
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

2.  A novel way of amino acid-specific assignment in (1)H-(15)N HSQC spectra with a wheat germ cell-free protein synthesis system.

Authors:  Eugene Hayato Morita; Masato Shimizu; Tomio Ogasawara; Yaeta Endo; Rikou Tanaka; Toshiyuki Kohno
Journal:  J Biomol NMR       Date:  2004-09       Impact factor: 2.835

3.  VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.

Authors:  Michael C Brothers; Anna E Nesbitt; Michael J Hallock; Sanjeewa G Rupasinghe; Ming Tang; Jason Harris; Jerome Baudry; Mary A Schuler; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-11-03       Impact factor: 2.835

4.  Structure and dynamics of the membrane-bound form of Pf1 coat protein: implications of structural rearrangement for virus assembly.

Authors:  Sang Ho Park; Francesca M Marassi; David Black; Stanley J Opella
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

5.  NMR-based conformational ensembles explain pH-gated opening and closing of OmpG channel.

Authors:  Tiandi Zhuang; Christina Chisholm; Min Chen; Lukas K Tamm
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

6.  NMR resonance assignments for sparsely 15N labeled proteins.

Authors:  Lianmei Feng; Han-Seung Lee; James H Prestegard
Journal:  J Biomol NMR       Date:  2007-05-09       Impact factor: 2.835

7.  Solution NMR resonance assignment strategies for β-barrel membrane proteins.

Authors:  Daniel A Fox; Linda Columbus
Journal:  Protein Sci       Date:  2013-06-27       Impact factor: 6.725

8.  Resonance assignment for a particularly challenging protein based on systematic unlabeling of amino acids to complement incomplete NMR data sets.

Authors:  Peter Bellstedt; Thomas Seiboth; Sabine Häfner; Henriette Kutscha; Ramadurai Ramachandran; Matthias Görlach
Journal:  J Biomol NMR       Date:  2013-08-14       Impact factor: 2.835

9.  The pKa values of the catalytic residues in the retaining glycoside hydrolase T26H mutant of T4 lysozyme.

Authors:  Jacob A Brockerman; Mark Okon; Stephen G Withers; Lawrence P McIntosh
Journal:  Protein Sci       Date:  2019-01-12       Impact factor: 6.725

10.  Rapid mass spectrometric analysis of 15N-Leu incorporation fidelity during preparation of specifically labeled NMR samples.

Authors:  Stephanie M E Truhlar; Carla F Cervantes; Justin W Torpey; Magnus Kjaergaard; Elizabeth A Komives
Journal:  Protein Sci       Date:  2008-06-20       Impact factor: 6.725

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