Literature DB >> 8913621

Aspartic proteinases: Fourier transform infrared spectroscopic studies of a model of the active side.

G Iliadis1, B Brzezinski, G Zundel.   

Abstract

We synthesized and studied by Fourier transform infrared spectroscopy nine monosalts of diamides as models for the active side of aspartic proteinases. One compound, the monosalt of meta-aminobenzoic acid diamide of fumaric acid (m-FUM), shows the same biological activity as pepsin with regard to the splitting of peptide bonds of the Pro-Thi-Glu-Phe-Phe(4-NO2)-Arg-Leu heptapeptide. The monosalt of m-FUM forms with oxindole a complex in which the carboxylic acid group of the monosalt of m-FUM is strongly hydrogen bonded with the O atom of the peptide bond of oxindole. When one water molecule is added to this complex, the strong field of the carboxylate group destabilizes an O-H bond of the water molecule. The distorted water molecule attacks the carbon atom of the peptide group, and the water proton transfers to the peptide N atom. Simultaneously, the C-N bond of the amide group is broken. Hence it is demonstrated that the catalytic mechanism of aspartic acid proteinases is a base catalysis. The results show that for this catalytic mechanism there are sufficient carboxylic and carboxylate groups, as well as a water molecule in the correct arrangement. It was also demonstrated with other monosalts of dicarboxylic acids that well-defined steric conditions of the carboxylic acid and the carboxylate group must be fulfilled to show hydrolytic activity with regard to oxindole molecules.

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Year:  1996        PMID: 8913621      PMCID: PMC1233770          DOI: 10.1016/S0006-3495(96)79480-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  X-ray analyses of aspartic proteinases. II. Three-dimensional structure of the hexagonal crystal form of porcine pepsin at 2.3 A resolution.

Authors:  J B Cooper; G Khan; G Taylor; I J Tickle; T L Blundell
Journal:  J Mol Biol       Date:  1990-07-05       Impact factor: 5.469

Review 2.  The structure and function of the aspartic proteinases.

Authors:  D R Davies
Journal:  Annu Rev Biophys Biophys Chem       Date:  1990

3.  Structure of recombinant human renin, a target for cardiovascular-active drugs, at 2.5 A resolution.

Authors:  A R Sielecki; K Hayakawa; M Fujinaga; M E Murphy; M Fraser; A K Muir; C T Carilli; J A Lewicki; J D Baxter; M N James
Journal:  Science       Date:  1989-03-10       Impact factor: 47.728

4.  Molecular and crystal structures of monoclinic porcine pepsin refined at 1.8 A resolution.

Authors:  A R Sielecki; A A Fedorov; A Boodhoo; N S Andreeva; M N James
Journal:  J Mol Biol       Date:  1990-07-05       Impact factor: 5.469

5.  Stereochemical analysis of peptide bond hydrolysis catalyzed by the aspartic proteinase penicillopepsin.

Authors:  M N James; A R Sielecki
Journal:  Biochemistry       Date:  1985-07-02       Impact factor: 3.162

6.  Structure and refinement of penicillopepsin at 1.8 A resolution.

Authors:  M N James; A R Sielecki
Journal:  J Mol Biol       Date:  1983-01-15       Impact factor: 5.469

7.  Structure and refinement at 1.8 A resolution of the aspartic proteinase from Rhizopus chinensis.

Authors:  K Suguna; R R Bott; E A Padlan; E Subramanian; S Sheriff; G H Cohen; D R Davies
Journal:  J Mol Biol       Date:  1987-08-20       Impact factor: 5.469

8.  Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action.

Authors:  K Suguna; E A Padlan; C W Smith; W D Carlson; D R Davies
Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

9.  X-ray analyses of aspartic proteinases. The three-dimensional structure at 2.1 A resolution of endothiapepsin.

Authors:  T L Blundell; J A Jenkins; B T Sewell; L H Pearl; J B Cooper; I J Tickle; B Veerapandian; S P Wood
Journal:  J Mol Biol       Date:  1990-02-20       Impact factor: 5.469

10.  A systematic series of synthetic chromophoric substrates for aspartic proteinases.

Authors:  B M Dunn; M Jimenez; B F Parten; M J Valler; C E Rolph; J Kay
Journal:  Biochem J       Date:  1986-08-01       Impact factor: 3.857

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