Literature DB >> 8901419

Small is beautiful: comparative genomics with the pufferfish (Fugu rubripes).

G Elgar1, R Sandford, S Aparicio, A Macrae, B Venkatesh, S Brenner.   

Abstract

As the Human Genome Project advances, it is clear that the emphasis will switch from accumulation of data to their interpretation. Comparative genomics provides a powerful way in which to analyse sequence data. Indeed, there is already a long list of 'model' organisms, which allow comparative analyses in a variety of ways. The very small vertebrate genome of the pufferfish provides a simple and economical way of comparing sequence data from mammals and fish, representing a large evolutionary divergence and so permitting the identification of essential elements that are still present in both species. These elements include genes and the associated machinery that controls their expression; elements that, in many cases, have survived the test of time.

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Year:  1996        PMID: 8901419     DOI: 10.1016/0168-9525(96)10018-4

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  41 in total

1.  Arabidopsis-rice: will colinearity allow gene prediction across the eudicot-monocot divide?

Authors:  K M Devos; J Beales; Y Nagamura; T Sasaki
Journal:  Genome Res       Date:  1999-09       Impact factor: 9.043

2.  Colinearity and its exceptions in orthologous adh regions of maize and sorghum.

Authors:  A P Tikhonov; P J SanMiguel; Y Nakajima; N M Gorenstein; J L Bennetzen; Z Avramova
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

3.  Analysis of 148 kb of genomic DNA around the wnt1 locus of Fugu rubripes.

Authors:  K Gellner; S Brenner
Journal:  Genome Res       Date:  1999-03       Impact factor: 9.043

4.  Is "junk" DNA mostly intron DNA?

Authors:  G K Wong; D A Passey; Y Huang; Z Yang; J Yu
Journal:  Genome Res       Date:  2000-11       Impact factor: 9.043

5.  Mapping of complex regulatory elements by pufferfish/zebrafish transgenesis.

Authors:  E V Rothenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

6.  Characterization of the mouse gene for the heavy metal-responsive transcription factor MTF-1.

Authors:  A Auf der Maur; T Belser; Y Wang; C Günes; P Lichtlen; O Georgiev; W Schaffner
Journal:  Cell Stress Chaperones       Date:  2000-07       Impact factor: 3.667

7.  Phospholipase C-gamma contains introns shared by src homology 2 domains in many unrelated proteins.

Authors:  Charlene M Manning; Wendy R Mathews; Leah P Fico; Justin R Thackeray
Journal:  Genetics       Date:  2003-06       Impact factor: 4.562

8.  Identification of novel tropomyosin 1 genes of pufferfish (Fugu rubripes) on genomic sequences and tissue distribution of their transcripts.

Authors:  Daisuke Ikeda; Takuya Toramoto; Yoshihiro Ochiai; Hiroaki Suetake; Yuzuru Suzuki; Shinsei Minoshima; Nobuyoshi Shimizu; Shugo Watabe
Journal:  Mol Biol Rep       Date:  2003-06       Impact factor: 2.316

9.  The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species.

Authors:  Cédric Muller; Mathieu Denis; Laurent Gentzbittel; Thomas Faraut
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

Review 10.  Comparative genomics: methods and applications.

Authors:  Bernhard Haubold; Thomas Wiehe
Journal:  Naturwissenschaften       Date:  2004-06-25
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