Literature DB >> 8875405

A computational strategy for the deconvolution of NMR spectra with multiplet structures and constraints: analysis of overlapping 13C-2H multiplets of 13C enriched metabolites from cell suspensions incubated in deuterated media.

R Laatikainen1, M Niemitz, W J Malaisse, M Biesemans, R Willem.   

Abstract

A computational strategy for the deconvolution of complex spectra involving scalar multiplet patterns is presented. This approach fits spectra that can be composed of single resonances as well as scalar coupling multiplets for which resonance frequencies, intensities, and lineshape parameters can be optimized. For multiplets, the coupling constant also is optimized. Any external information about the optimizable parameters can be taken into account as external constraints. A lineshape described by absorptive and dispersive Lorentzian and Gaussian contributions and the baseline with up to 40 Fourier and polynomial terms can likewise be optimized. The effectiveness of the procedure is assessed on the basis of computer simulated deconvolutions of a composite of 1J(13C-2H) multiplets arising from a mixture of all possible 13C-2H isotopomers of deuterated L-[3-13C]lactate generated from cell preparations incubated with D-[1-13C]glucose in D2O, which was analyzed previously with a manual deconvolution procedure (R. Willem, M. Biesemans, F. Kayser, W. J. Malaisse, Magn, Reson. Med. 31, 259-267 (1994)). The use of constraints is shown to lead to an improvement in the results. The fitting strategies and the importance of the baseline as an origin of bias are discussed.

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Year:  1996        PMID: 8875405     DOI: 10.1002/mrm.1910360306

Source DB:  PubMed          Journal:  Magn Reson Med        ISSN: 0740-3194            Impact factor:   4.668


  23 in total

1.  Proline metabolism in the wild-type and in a salt-tolerant mutant of nicotiana plumbaginifolia studied by (13)C-nuclear magnetic resonance imaging

Authors: 
Journal:  Plant Physiol       Date:  1999-12       Impact factor: 8.340

2.  Diagnosing diabetic nephropathy by 1H NMR metabonomics of serum.

Authors:  Ville-Petteri Mäkinen; Pasi Soininen; Carol Forsblom; Maija Parkkonen; Petri Ingman; Kimmo Kaski; Per-Henrik Groop; Mika Ala-Korpela
Journal:  MAGMA       Date:  2006-12-15       Impact factor: 2.310

3.  beta-Amyloid infusion results in delayed and age-dependent learning deficits without role of inflammation or beta-amyloid deposits.

Authors:  Tarja Malm; Michael Ort; Leena Tähtivaara; Niko Jukarainen; Gundars Goldsteins; Jukka Puoliväli; Antti Nurmi; Raimo Pussinen; Toni Ahtoniemi; Taina-Kaisa Miettinen; Katja Kanninen; Suvi Leskinen; Nina Vartiainen; Juha Yrjänheikki; Reino Laatikainen; Marni E Harris-White; Milla Koistinaho; Sally A Frautschy; Jan Bures; Jari Koistinaho
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-24       Impact factor: 11.205

4.  Effects of D-glucose upon D-fructose metabolism in rat hepatocytes: A 13C NMR study.

Authors:  W J Malaisse; L Ladrière; I Verbruggen; R Willem
Journal:  Mol Cell Biochem       Date:  2002-12       Impact factor: 3.396

5.  Identification and quantification of metabolites in (1)H NMR spectra by Bayesian model selection.

Authors:  Cheng Zheng; Shucha Zhang; Susanne Ragg; Daniel Raftery; Olga Vitek
Journal:  Bioinformatics       Date:  2011-03-12       Impact factor: 6.937

6.  Complete 1H NMR spectral analysis of ten chemical markers of Ginkgo biloba.

Authors:  José G Napolitano; David C Lankin; Shao-Nong Chen; Guido F Pauli
Journal:  Magn Reson Chem       Date:  2012-06-22       Impact factor: 2.447

7.  Proton fingerprints portray molecular structures: enhanced description of the 1H NMR spectra of small molecules.

Authors:  José G Napolitano; David C Lankin; James B McAlpine; Matthias Niemitz; Samuli-Petrus Korhonen; Shao-Nong Chen; Guido F Pauli
Journal:  J Org Chem       Date:  2013-09-06       Impact factor: 4.354

8.  Quality Control of Therapeutic Peptides by 1H NMR HiFSA Sequencing.

Authors:  Mary P Choules; Jonathan Bisson; Wei Gao; David C Lankin; James B McAlpine; Matthias Niemitz; Birgit U Jaki; Scott G Franzblau; Guido F Pauli
Journal:  J Org Chem       Date:  2019-02-22       Impact factor: 4.354

9.  The tandem of full spin analysis and qHNMR for the quality control of botanicals exemplified with Ginkgo biloba.

Authors:  José G Napolitano; Tanja Gödecke; María F Rodríguez-Brasco; Birgit U Jaki; Shao-Nong Chen; David C Lankin; Guido F Pauli
Journal:  J Nat Prod       Date:  2012-02-14       Impact factor: 4.050

10.  Metabolism of the dimethyl ester of [2,3-(13)C]succinic acid in rat hepatocytes.

Authors:  W J Malaisse; L Ladrière; H Jijakli; R Laatikainen; M Niemitz; I Verbruggen; M Biesernans; R Willem
Journal:  Mol Cell Biochem       Date:  1998-12       Impact factor: 3.396

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