Literature DB >> 24007197

Proton fingerprints portray molecular structures: enhanced description of the 1H NMR spectra of small molecules.

José G Napolitano1, David C Lankin, James B McAlpine, Matthias Niemitz, Samuli-Petrus Korhonen, Shao-Nong Chen, Guido F Pauli.   

Abstract

The characteristic signals observed in NMR spectra encode essential information on the structure of small molecules. However, extracting all of this information from complex signal patterns is not trivial. This report demonstrates how computer-aided spectral analysis enables the complete interpretation of 1D (1)H NMR data. The effectiveness of this approach is illustrated with a set of organic molecules, for which replicas of their (1)H NMR spectra were generated. The potential impact of this methodology on organic chemistry research is discussed.

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Year:  2013        PMID: 24007197      PMCID: PMC3812940          DOI: 10.1021/jo4011624

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  20 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Process and reaction monitoring by low-field NMR spectroscopy.

Authors:  Franz Dalitz; Markus Cudaj; Michael Maiwald; Gisela Guthausen
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-12-06       Impact factor: 9.795

3.  Atomic structure of progesterone complexed with its receptor.

Authors:  S P Williams; P B Sigler
Journal:  Nature       Date:  1998-05-28       Impact factor: 49.962

4.  The tandem of full spin analysis and qHNMR for the quality control of botanicals exemplified with Ginkgo biloba.

Authors:  José G Napolitano; Tanja Gödecke; María F Rodríguez-Brasco; Birgit U Jaki; Shao-Nong Chen; David C Lankin; Guido F Pauli
Journal:  J Nat Prod       Date:  2012-02-14       Impact factor: 4.050

Review 5.  Quantitative 1H NMR. Development and potential of an analytical method: an update.

Authors:  Guido F Pauli; Tanja Gödecke; Birgit U Jaki; David C Lankin
Journal:  J Nat Prod       Date:  2012-04-06       Impact factor: 4.050

6.  Complete assignments of the (1)H and (13)C chemical shifts and J(H,H) coupling constants in NMR spectra of D-glucopyranose and all D-glucopyranosyl-D-glucopyranosides.

Authors:  Mattias U Roslund; Petri Tähtinen; Matthias Niemitz; Rainer Sjöholm
Journal:  Carbohydr Res       Date:  2007-10-22       Impact factor: 2.104

7.  Spectral analysis of 1H coupled 13C spectra of the amino acids: adaptive spectral library of amino acid 13C isotopomers and positional fractional 13C enrichments.

Authors:  Mika Tiainen; Hannu Maaheimo; Matthias Niemitz; Pasi Soininen; Reino Laatikainen
Journal:  Magn Reson Chem       Date:  2008-02       Impact factor: 2.447

8.  HiFSA fingerprinting applied to isomers with near-identical NMR spectra: the silybin/isosilybin case.

Authors:  José G Napolitano; David C Lankin; Tyler N Graf; J Brent Friesen; Shao-Nong Chen; James B McAlpine; Nicholas H Oberlies; Guido F Pauli
Journal:  J Org Chem       Date:  2013-03-05       Impact factor: 4.354

9.  HMDB: the Human Metabolome Database.

Authors:  David S Wishart; Dan Tzur; Craig Knox; Roman Eisner; An Chi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; Mike Lewis; Marie-Aude Coutouly; Ian Forsythe; Peter Tang; Savita Shrivastava; Kevin Jeroncic; Paul Stothard; Godwin Amegbey; David Block; David D Hau; James Wagner; Jessica Miniaci; Melisa Clements; Mulu Gebremedhin; Natalie Guo; Ying Zhang; Gavin E Duggan; Glen D Macinnis; Alim M Weljie; Reza Dowlatabadi; Fiona Bamforth; Derrick Clive; Russ Greiner; Liang Li; Tom Marrie; Brian D Sykes; Hans J Vogel; Lori Querengesser
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

10.  Avogadro: an advanced semantic chemical editor, visualization, and analysis platform.

Authors:  Marcus D Hanwell; Donald E Curtis; David C Lonie; Tim Vandermeersch; Eva Zurek; Geoffrey R Hutchison
Journal:  J Cheminform       Date:  2012-08-13       Impact factor: 5.514

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  18 in total

1.  Stereochemistry of a Second Riolozane and Other Diterpenoids from Jatropha dioica.

Authors:  Elda M Melchor-Martínez; David A Silva-Mares; Ernesto Torres-López; Noemí Waksman-Minsky; Guido F Pauli; Shao-Nong Chen; Matthias Niemitz; Mariano Sánchez-Castellanos; Alfredo Toscano; Gabriel Cuevas; Verónica M Rivas-Galindo
Journal:  J Nat Prod       Date:  2017-08-03       Impact factor: 4.050

2.  Absolute Configuration of Native Oligomeric Proanthocyanidins with Dentin Biomodification Potency.

Authors:  Joo-Won Nam; Rasika S Phansalkar; David C Lankin; James B McAlpine; Ariene A Leme-Kraus; Cristina M P Vidal; Li-She Gan; Ana Bedran-Russo; Shao-Nong Chen; Guido F Pauli
Journal:  J Org Chem       Date:  2017-01-18       Impact factor: 4.354

3.  Quality Control of Therapeutic Peptides by 1H NMR HiFSA Sequencing.

Authors:  Mary P Choules; Jonathan Bisson; Wei Gao; David C Lankin; James B McAlpine; Matthias Niemitz; Birgit U Jaki; Scott G Franzblau; Guido F Pauli
Journal:  J Org Chem       Date:  2019-02-22       Impact factor: 4.354

4.  Digital NMR profiles as building blocks: assembling ¹H fingerprints of steviol glycosides.

Authors:  José G Napolitano; Charlotte Simmler; James B McAlpine; David C Lankin; Shao-Nong Chen; Guido F Pauli
Journal:  J Nat Prod       Date:  2015-02-25       Impact factor: 4.050

5.  Computer-assisted 1 H NMR analysis of the anti-tuberculosis drug lead ecumicin.

Authors:  Wei Gao; José G Napolitano; David C Lankin; Jin-Yong Kim; Ying-Yu Jin; Hanki Lee; Joo-Won Suh; Shao-Nong Chen; Guido F Pauli
Journal:  Magn Reson Chem       Date:  2016-04-19       Impact factor: 2.447

6.  Targeting Trimeric and Tetrameric Proanthocyanidins of Cinnamomum verum Bark as Bioactives for Dental Therapies.

Authors:  Joo-Won Nam; Rasika S Phansalkar; David C Lankin; James B McAlpine; Ariene A Leme-Kraus; Ana K Bedran-Russo; Shao-Nong Chen; Guido F Pauli
Journal:  J Nat Prod       Date:  2020-11-05       Impact factor: 4.050

7.  Subtle Chemical Shifts Explain the NMR Fingerprints of Oligomeric Proanthocyanidins with High Dentin Biomodification Potency.

Authors:  Joo-Won Nam; Rasika S Phansalkar; David C Lankin; Jonathan Bisson; James B McAlpine; Ariene A Leme; Cristina M P Vidal; Benjamin Ramirez; Matthias Niemitz; Ana Bedran-Russo; Shao-Nong Chen; Guido F Pauli
Journal:  J Org Chem       Date:  2015-07-27       Impact factor: 4.354

8.  Spin System Modeling of Nuclear Magnetic Resonance Spectra for Applications in Metabolomics and Small Molecule Screening.

Authors:  Hesam Dashti; William M Westler; Marco Tonelli; Jonathan R Wedell; John L Markley; Hamid R Eghbalnia
Journal:  Anal Chem       Date:  2017-11-07       Impact factor: 6.986

9.  NMR reveals an undeclared constituent in custom synthetic peptides.

Authors:  Mary P Choules; Jonathan Bisson; Charlotte Simmler; James B McAlpine; Gabriel Giancaspro; Anton Bzhelyansky; Matthias Niemitz; Guido F Pauli
Journal:  J Pharm Biomed Anal       Date:  2019-10-10       Impact factor: 3.935

Review 10.  The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research.

Authors:  James B McAlpine; Shao-Nong Chen; Andrei Kutateladze; John B MacMillan; Giovanni Appendino; Andersson Barison; Mehdi A Beniddir; Maique W Biavatti; Stefan Bluml; Asmaa Boufridi; Mark S Butler; Robert J Capon; Young H Choi; David Coppage; Phillip Crews; Michael T Crimmins; Marie Csete; Pradeep Dewapriya; Joseph M Egan; Mary J Garson; Grégory Genta-Jouve; William H Gerwick; Harald Gross; Mary Kay Harper; Precilia Hermanto; James M Hook; Luke Hunter; Damien Jeannerat; Nai-Yun Ji; Tyler A Johnson; David G I Kingston; Hiroyuki Koshino; Hsiau-Wei Lee; Guy Lewin; Jie Li; Roger G Linington; Miaomiao Liu; Kerry L McPhail; Tadeusz F Molinski; Bradley S Moore; Joo-Won Nam; Ram P Neupane; Matthias Niemitz; Jean-Marc Nuzillard; Nicholas H Oberlies; Fernanda M M Ocampos; Guohui Pan; Ronald J Quinn; D Sai Reddy; Jean-Hugues Renault; José Rivera-Chávez; Wolfgang Robien; Carla M Saunders; Thomas J Schmidt; Christoph Seger; Ben Shen; Christoph Steinbeck; Hermann Stuppner; Sonja Sturm; Orazio Taglialatela-Scafati; Dean J Tantillo; Robert Verpoorte; Bin-Gui Wang; Craig M Williams; Philip G Williams; Julien Wist; Jian-Min Yue; Chen Zhang; Zhengren Xu; Charlotte Simmler; David C Lankin; Jonathan Bisson; Guido F Pauli
Journal:  Nat Prod Rep       Date:  2018-07-13       Impact factor: 13.423

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