Literature DB >> 8874027

Is there an error correcting code in the base sequence in DNA?

L S Liebovitch1, Y Tao, A T Todorov, L Levine.   

Abstract

Modern methods of encoding information into digital form include error check digits that are functions of the other information digits. When digital information is transmitted, the values of the error check digits can be computed from the information digits to determine whether the information has been received accurately. These error correcting codes make it possible to detect and correct common errors in transmission. The sequence of bases in DNA is also a digital code consisting of four symbols: A, C, G, and T. Does DNA also contain an error correcting code? Such a code would allow repair enzymes to protect the fidelity of nonreplicating DNA and increase the accuracy of replication. If a linear block error correcting code is present in DNA then some bases would be a linear function of the other bases in each set of bases. We developed an efficient procedure to determine whether such an error correcting code is present in the base sequence. We illustrate the use of this procedure by using it to analyze the lac operon and the gene for cytochrome c. These genes do not appear to contain such a simple error correcting code.

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Year:  1996        PMID: 8874027      PMCID: PMC1233620          DOI: 10.1016/S0006-3495(96)79356-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  3 in total

1.  Linguistic features of noncoding DNA sequences.

Authors:  R N Mantegna; S V Buldyrev; A L Goldberger; S Havlin; C K Peng; M Simons; H E Stanley
Journal:  Phys Rev Lett       Date:  1994-12-05       Impact factor: 9.161

2.  Is genetic code error-correcting?

Authors:  J Rzeszowska-Wolny
Journal:  J Theor Biol       Date:  1983-10-21       Impact factor: 2.691

3.  Are introns in-series error-detecting sequences?

Authors:  D R Forsdyke
Journal:  J Theor Biol       Date:  1981-12-21       Impact factor: 2.691

  3 in total
  5 in total

Review 1.  Why nature chose A, C, G and U/T: an error-coding perspective of nucleotide alphabet composition.

Authors:  Dónall A Mac Dónaill
Journal:  Orig Life Evol Biosph       Date:  2003-10       Impact factor: 1.950

2.  Is a genome a codeword of an error-correcting code?

Authors:  Luzinete C B Faria; Andréa S L Rocha; João H Kleinschmidt; Márcio C Silva-Filho; Edson Bim; Roberto H Herai; Michel E B Yamagishi; Reginaldo Palazzo
Journal:  PLoS One       Date:  2012-05-23       Impact factor: 3.240

Review 3.  Three subsets of sequence complexity and their relevance to biopolymeric information.

Authors:  David L Abel; Jack T Trevors
Journal:  Theor Biol Med Model       Date:  2005-08-11       Impact factor: 2.432

4.  Empirical relationship between intra-purine and intra-pyrimidine differences in conserved gene sequences.

Authors:  Ashesh Nandy
Journal:  PLoS One       Date:  2009-08-28       Impact factor: 3.240

5.  A convolutional code-based sequence analysis model and its application.

Authors:  Xiao Liu; Xiaoli Geng
Journal:  Int J Mol Sci       Date:  2013-04-16       Impact factor: 5.923

  5 in total

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