Literature DB >> 8868493

A large compressibility change of protein induced by a single amino acid substitution.

K Gekko1, Y Tamura, E Ohmae, H Hayashi, H Kagamiyama, H Ueno.   

Abstract

The adiabatic compressibility (beta s) was determined, by means of the precise sound velocity and density measurements, for a series of single amino acid substituted mutant enzymes of Escherichia coli dihydrofolate reductase (DHFR) and aspartate aminotransferase (AspAT). Interestingly, the beta s values of both DHFR and AspAT were influenced markedly by the mutations at glycine-121 and valine-39, respectively, in which the magnitude of the change was proportional to the enzyme activity. This result demonstrates that the local change of the primary structure plays an important role in atomic packing and protein dynamics, which leads to the modified stability and enzymatic function. This is the first report on the compressibility of mutant proteins.

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Year:  1996        PMID: 8868493      PMCID: PMC2143367          DOI: 10.1002/pro.5560050319

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  9 in total

1.  Thermodynamic fluctuations in protein molecules.

Authors:  A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

Review 2.  Ultrasonic velocimetry of biological compounds.

Authors:  A P Sarvazyan
Journal:  Annu Rev Biophys Biophys Chem       Date:  1991

3.  Compressibility-structure relationship of globular proteins.

Authors:  K Gekko; Y Hasegawa
Journal:  Biochemistry       Date:  1986-10-21       Impact factor: 3.162

4.  Point mutations at glycine-121 of Escherichia coli dihydrofolate reductase: important roles of a flexible loop in the stability and function.

Authors:  K Gekko; Y Kunori; H Takeuchi; S Ichihara; M Kodama
Journal:  J Biochem       Date:  1994-07       Impact factor: 3.387

5.  Compactness of thermally and chemically denatured ribonuclease A as revealed by volume and compressibility.

Authors:  Y Tamura; K Gekko
Journal:  Biochemistry       Date:  1995-02-14       Impact factor: 3.162

6.  Three-dimensional structures of aspartate aminotransferase from Escherichia coli and its mutant enzyme at 2.5 A resolution.

Authors:  S Kamitori; A Okamoto; K Hirotsu; T Higuchi; S Kuramitsu; H Kagamiyama; Y Matsuura; Y Katsube
Journal:  J Biochem       Date:  1990-08       Impact factor: 3.387

7.  Adiabatic compressibility of myosin subfragment-1 and heavy meromyosin with or without nucleotide.

Authors:  Y Tamura; N Suzuki; K Mihashi
Journal:  Biophys J       Date:  1993-11       Impact factor: 4.033

8.  Replacement of an interdomain residue Val39 of Escherichia coli aspartate aminotransferase affects the catalytic competence without altering the substrate specificity of the enzyme.

Authors:  H Hayashi; S Kuramitsu; H Kagamiyama
Journal:  J Biochem       Date:  1991-05       Impact factor: 3.387

9.  Crystal structure of unliganded Escherichia coli dihydrofolate reductase. Ligand-induced conformational changes and cooperativity in binding.

Authors:  C Bystroff; J Kraut
Journal:  Biochemistry       Date:  1991-02-26       Impact factor: 3.162

  9 in total
  2 in total

1.  Effects of a distal mutation on active site chemistry.

Authors:  Lin Wang; Scott Tharp; Tzvia Selzer; Stephen J Benkovic; Amnon Kohen
Journal:  Biochemistry       Date:  2006-02-07       Impact factor: 3.162

2.  Conformational changes and loose packing promote E. coli Tryptophanase cold lability.

Authors:  Anna Kogan; Garik Y Gdalevsky; Rivka Cohen-Luria; Yehuda Goldgur; Robert S Phillips; Abraham H Parola; Orna Almog
Journal:  BMC Struct Biol       Date:  2009-10-08
  2 in total

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