Literature DB >> 8867845

Databases of mRNA untranslated regions for metazoa.

G Pesole1, G Grillo, S Liuni.   

Abstract

The important role that untranslated regions of mRNAs (UTR) may play in gene regulation and expression is now widely accepted. For this reason we developed UTRDB, a specialized database of 5'- and 3'-UTR of eukaryotic mRNAs cleaned of redundancy. This paper describes the composition and the general feature of UTRDB. The analysis of UTRDB by using suitable statistical methods could provide useful information for guiding the experimental work aimed at delucidating the role of UTR sequences in gene regulation and expression.

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Year:  1996        PMID： 8867845     DOI： 10.1016/s0097-8485(96)80016-7

Source DB:  PubMed          Journal:  Comput Chem        ISSN： 0097-8485


  11 in total

1.  UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.

Authors:  G Pesole; S Liuni; G Grillo; F Licciulli; A Larizza; W Makalowski; C Saccone
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

Authors:  Graziano Pesole; Sabino Liuni; Giorgio Grillo; Flavio Licciulli; Flavio Mignone; Carmela Gissi; Cecilia Saccone
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  An oligonucleotide fingerprint normalized and expressed sequence tag characterized zebrafish cDNA library.

Authors:  M D Clark; S Hennig; R Herwig; S W Clifton; M A Marra; H Lehrach; S L Johnson
Journal:  Genome Res       Date:  2001-09       Impact factor: 9.043

4.  UTRdb: a specialized database of 5' and 3' untranslated regions of eukaryotic mRNAs.

Authors:  G Pesole; S Liuni; G Grillo; M Ippedico; A Larizza; W Makalowski; C Saccone
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

5.  UTRdb: a specialized database of 5'- and 3'-untranslated regions of eukaryotic mRNAs.

Authors:  G Pesole; S Liuni; G Grillo; C Saccone
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  Gene number in an invertebrate chordate, Ciona intestinalis.

Authors:  M W Simmen; S Leitgeb; V H Clark; S J Jones; A Bird
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

7.  The EMBL Nucleotide Sequence Database.

Authors:  G Stoesser; P Sterk; M A Tuli; P J Stoehr; G N Cameron
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

8.  Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs.

Authors:  S Wiemann; B Weil; R Wellenreuther; J Gassenhuber; S Glassl; W Ansorge; M Böcher; H Blöcker; S Bauersachs; H Blum; J Lauber; A Düsterhöft; A Beyer; K Köhrer; N Strack; H W Mewes; B Ottenwälder; B Obermaier; J Tampe; D Heubner; R Wambutt; B Korn; M Klein; A Poustka
Journal:  Genome Res       Date:  2001-03       Impact factor: 9.043

9.  Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome.

Authors:  Jong S Leong; Stuart G Jantzen; Kristian R von Schalburg; Glenn A Cooper; Amber M Messmer; Nancy Y Liao; Sarah Munro; Richard Moore; Robert A Holt; Steven J M Jones; William S Davidson; Ben F Koop
Journal:  BMC Genomics       Date:  2010-04-30       Impact factor: 3.969

10.  Investigation of G72 (DAOA) expression in the human brain.

Authors:  Isabel Benzel; James N C Kew; Ramya Viknaraja; Fiona Kelly; Jacqueline de Belleroche; Steven Hirsch; Thirza H Sanderson; Peter R Maycox
Journal:  BMC Psychiatry       Date:  2008-12-11       Impact factor: 3.630
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