Literature DB >> 8846217

Why protein crystals favour some space-groups over others.

S W Wukovitz1, T O Yeates.   

Abstract

One of the most puzzling observations in protein crystallography is that the various space-group symmetries occur with striking non-uniformity. Molecular close-packing has been invoked to explain similar observations for crystals of small organic compounds, but does not appear to be the dominant factor for proteins. Instead, we find that the observed frequencies for both two- and three-dimensional crystals can be explained by an entropic model. Under a requirement for connectivity, the favoured space groups are simply less restrictive than others in that they allow the molecules more rigid-body degrees of freedom and can therefore be realized in a greater number of ways. This result underscores the importance of the nucleation event in crystallization and leads to specific ideas for crystallizing water-soluble and membrane proteins.

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Year:  1995        PMID: 8846217     DOI: 10.1038/nsb1295-1062

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  49 in total

1.  Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.

Authors:  Katherine A Kantardjieff; Bernhard Rupp
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

2.  Computational design of a protein crystal.

Authors:  Christopher J Lanci; Christopher M MacDermaid; Seung-gu Kang; Rudresh Acharya; Benjamin North; Xi Yang; X Jade Qiu; William F DeGrado; Jeffery G Saven
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-25       Impact factor: 11.205

3.  High-resolution structures of a heterochiral coiled coil.

Authors:  David E Mortenson; Jay D Steinkruger; Dale F Kreitler; Dominic V Perroni; Gregory P Sorenson; Lijun Huang; Ritesh Mittal; Hyun Gi Yun; Benjamin R Travis; Mahesh K Mahanthappa; Katrina T Forest; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

4.  Quasiracemic crystallization as a tool to assess the accommodation of noncanonical residues in nativelike protein conformations.

Authors:  David E Mortenson; Kenneth A Satyshur; Ilia A Guzei; Katrina T Forest; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2012-01-18       Impact factor: 15.419

5.  A functional role of Rv1738 in Mycobacterium tuberculosis persistence suggested by racemic protein crystallography.

Authors:  Richard D Bunker; Kalyaneswar Mandal; Ghader Bashiri; Jessica J Chaston; Bradley L Pentelute; J Shaun Lott; Stephen B H Kent; Edward N Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

6.  An approach to crystallizing proteins by synthetic symmetrization.

Authors:  D Rey Banatao; Duilio Cascio; Christopher S Crowley; Mark R Fleissner; Heather L Tienson; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

7.  Analysis of solvent content and oligomeric states in protein crystals--does symmetry matter?

Authors:  Maksymilian Chruszcz; Wojciech Potrzebowski; Matthew D Zimmerman; Marek Grabowski; Heping Zheng; Piotr Lasota; Wladek Minor
Journal:  Protein Sci       Date:  2008-04       Impact factor: 6.725

8.  Racemic crystallography--easy crystals and easy structures: what's not to like?

Authors:  Brian W Matthews
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

9.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

10.  Packing interface energetics in different crystal forms of the λ Cro dimer.

Authors:  Logan S Ahlstrom; Osamu Miyashita
Journal:  Proteins       Date:  2013-11-23
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