Literature DB >> 8838590

Do "antisense proteins" exist?

K C Chou1, C T Zhang, D W Elrod.   

Abstract

A DNA double helix consists of two complementary strands antiparallel with each other. One of them is the sense chain, while the other is an antisense chain which does not directly involve the protein-encoding process. The reason that an antisense chain cannot encode for a protein is generally attributed to the lack of certain preconditions such as a promotor and some necessary sequence segments. Suppose it were provided with all these preconditions, could an antisense chain encode for an "antisense protein"? To answer this question, an analysis has been performed based on the existing database. Nine proteins have been found that have a 100% sequence match with the hypothetical antisense proteins derived from the known Escherichia coli antisense chains.

Entities:  

Mesh:

Substances:

Year:  1996        PMID: 8838590     DOI: 10.1007/bf01886811

Source DB:  PubMed          Journal:  J Protein Chem        ISSN: 0277-8033


  8 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Codon usage tabulated from the GenBank genetic sequence data.

Authors:  K Wada; Y Wada; H Doi; F Ishibashi; T Gojobori; T Ikemura
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

3.  Analysis of distribution of bases in the coding sequences by a diagrammatic technique.

Authors:  C T Zhang; R Zhang
Journal:  Nucleic Acids Res       Date:  1991-11-25       Impact factor: 16.971

4.  The PIR-International Protein Sequence Database.

Authors:  D G George; W C Barker; H W Mewes; F Pfeiffer; A Tsugita
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

5.  GenBank.

Authors:  D A Benson; M Boguski; D J Lipman; J Ostell
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

6.  The SWISS-PROT protein sequence data bank: current status.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

7.  A graphic approach to analyzing codon usage in 1562 Escherichia coli protein coding sequences.

Authors:  C T Zhang; K C Chou
Journal:  J Mol Biol       Date:  1994-04-22       Impact factor: 5.469

8.  Diagrammatization of codon usage in 339 human immunodeficiency virus proteins and its biological implication.

Authors:  K C Chou; C T Zhang
Journal:  AIDS Res Hum Retroviruses       Date:  1992-12       Impact factor: 2.205

  8 in total
  15 in total

1.  A study of the Immune Epitope Database for some fungi species using network topological indices.

Authors:  Severo Vázquez-Prieto; Esperanza Paniagua; Hugo Solana; Florencio M Ubeira; Humberto González-Díaz
Journal:  Mol Divers       Date:  2017-05-31       Impact factor: 2.943

2.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

3.  iACP: a sequence-based tool for identifying anticancer peptides.

Authors:  Wei Chen; Hui Ding; Pengmian Feng; Hao Lin; Kuo-Chen Chou
Journal:  Oncotarget       Date:  2016-03-29

4.  New method for global alignment of 2 DNA sequences by the tree data structure.

Authors:  Zhao-Hui Qi; Xiao-Qin Qi; Chen-Chen Liu
Journal:  J Theor Biol       Date:  2009-12-16       Impact factor: 2.691

5.  Search and analysis of identical reverse octapeptides in unrelated proteins.

Authors:  Konda Mani Saravanan; Samuel Selvaraj
Journal:  Genomics Proteomics Bioinformatics       Date:  2013-03-21       Impact factor: 7.691

6.  TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications.

Authors:  Jia-Feng Yu; Xiao Sun; Ji-Hua Wang
Journal:  J Theor Biol       Date:  2009-08-11       Impact factor: 2.691

7.  Scoring function for DNA-drug docking of anticancer and antiparasitic compounds based on spectral moments of 2D lattice graphs for molecular dynamics trajectories.

Authors:  Lázaro G Pérez-Montoto; Lourdes Santana; Humberto González-Díaz
Journal:  Eur J Med Chem       Date:  2009-06-17       Impact factor: 6.514

8.  Classification analysis of dual nucleotides using dimension reduction.

Authors:  Zhao-Hui Qi; Jian-Min Wang; Xiao-Qin Qi
Journal:  J Theor Biol       Date:  2009-05-27       Impact factor: 2.691

9.  Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices.

Authors:  Cristian Robert Munteanu; Alexandre L Magalhães; Eugenio Uriarte; Humberto González-Díaz
Journal:  J Theor Biol       Date:  2008-12-06       Impact factor: 2.691

10.  Generalized lattice graphs for 2D-visualization of biological information.

Authors:  H González-Díaz; L G Pérez-Montoto; A Duardo-Sanchez; E Paniagua; S Vázquez-Prieto; R Vilas; M A Dea-Ayuela; F Bolas-Fernández; C R Munteanu; J Dorado; J Costas; F M Ubeira
Journal:  J Theor Biol       Date:  2009-07-29       Impact factor: 2.691

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.