Literature DB >> 8837025

PICDI, a simple program for codon bias calculation.

E Rodríguez-Belmonte1, M A Freire-Picos, A M Rodríguez-Torres, M I González-Siso, M E Cerdán, J M Rodríguez-Seijo.   

Abstract

PICDI is a very simple program designed to calculate the Intrinsic Codon Deviation Index (ICDI). The program is available in Macintosh as well a PC format. Requirements for correct input of the sequences have been kept to a minimum and the analysis of sequences up to 2000 codons is very quick. The ICDI is very useful for estimation of codon bias of genes from species in which optimal codons are not known. The availability of a computer program for its calculation will increase its usefulness in the fields of Molecular Biology and Biotechnology.

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Year:  1996        PMID： 8837025     DOI： 10.1007/bf02900357

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN： 1073-6085            Impact factor:   2.695


  8 in total

1.  The 'effective number of codons' used in a gene.

Authors:  F Wright
Journal:  Gene       Date:  1990-03-01       Impact factor: 3.688

2.  CODONS: a microcomputer program for codon usage analysis.

Authors:  A T Lloyd; P M Sharp
Journal:  J Hered       Date:  1992 May-Jun       Impact factor: 2.645

Review 3.  Synonymous codon usage in Saccharomyces cerevisiae.

Authors:  P M Sharp; E Cowe
Journal:  Yeast       Date:  1991-10       Impact factor: 3.239

4.  The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.

Authors:  P M Sharp; W H Li
Journal:  Nucleic Acids Res       Date:  1987-02-11       Impact factor: 16.971

Review 5.  Codon catalog usage and the genome hypothesis.

Authors:  R Grantham; C Gautier; M Gouy; R Mercier; A Pavé
Journal:  Nucleic Acids Res       Date:  1980-01-11       Impact factor: 16.971

6.  Codon usage in Kluyveromyces lactis and in yeast cytochrome c-encoding genes.

Authors:  M A Freire-Picos; M I González-Siso; E Rodríguez-Belmonte; A M Rodríguez-Torres; E Ramil; M E Cerdán
Journal:  Gene       Date:  1994-02-11       Impact factor: 3.688

7.  Codon selection in yeast.

Authors:  J L Bennetzen; B D Hall
Journal:  J Biol Chem       Date:  1982-03-25       Impact factor: 5.157

Review 8.  Codon usage and tRNA content in unicellular and multicellular organisms.

Authors:  T Ikemura
Journal:  Mol Biol Evol       Date:  1985-01       Impact factor: 16.240
  8 in total
  1 in total

1.  Strong Selectional Forces Fine-Tune CpG Content in Genes Involved in Neurological Disorders as Revealed by Codon Usage Patterns.

Authors:  Rekha Khandia; Anushri Sharma; Taha Alqahtani; Ali M Alqahtani; Yahya I Asiri; Saud Alqahtani; Ahmed M Alharbi; Mohammad Amjad Kamal
Journal:  Front Neurosci       Date:  2022-06-10       Impact factor: 5.152
  1 in total

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