Literature DB >> 8836106

Crystal structures of Toxoplasma gondii HGXPRTase reveal the catalytic role of a long flexible loop.

M A Schumacher1, D Carter, D S Roos, B Ullman, R G Brennan.   

Abstract

Crystal structures of substrate-free and XMP-soaked hypoxanthine-guanine-xanthine phosphoribosyltransferase (HGXPRTase) of the opportunistic pathogen Toxoplasma gondii have been determined to 2.4 and 2.9 A resolution, respectively. HGXPRTase displays the conserved PRTase fold. In the structure of the enzyme bound to its product, a long flexible loop (residues 115-126) is located away from the active site. Comparison to the substrate-free structure reveals a striking relocation of the loop, which is poised to cover the catalytic pocket, thus providing a mechanism by which the HG(X)PRTases shield their oxocarbonium transition states from nucleophilic attack by the bulk solvent. The conserved Ser 117-Tyr 118 dipeptide within the loop is brought to the active site, completing the ensemble of catalytic residues.

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Year:  1996        PMID: 8836106     DOI: 10.1038/nsb1096-881

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  12 in total

1.  Induced fit in arginine kinase.

Authors:  G Zhou; W R Ellington; M S Chapman
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Crystal structure of a predicted phosphoribosyltransferase (TT1426) from Thermus thermophilus HB8 at 2.01 A resolution.

Authors:  Mutsuko Kukimoto-Niino; Rie Shibata; Kazutaka Murayama; Hiroaki Hamana; Madoka Nishimoto; Yoshitaka Bessho; Takaho Terada; Mikako Shirouzu; Seiki Kuramitsu; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2005-02-02       Impact factor: 6.725

3.  Functional significance of four successive glycine residues in the pyrophosphate binding loop of fungal 6-oxopurine phosphoribosyltransferases.

Authors:  Lucile Moynié; Marie-France Giraud; Annick Breton; Fanny Boissier; Bertrand Daignan-Fornier; Alain Dautant
Journal:  Protein Sci       Date:  2012-06-11       Impact factor: 6.725

4.  Analysis of the assembly function of the human immunodeficiency virus type 1 gag protein nucleocapsid domain.

Authors:  Y Zhang; H Qian; Z Love; E Barklis
Journal:  J Virol       Date:  1998-03       Impact factor: 5.103

5.  Virtual screening of combinatorial libraries across a gene family: in search of inhibitors of Giardia lamblia guanine phosphoribosyltransferase.

Authors:  A M Aronov; N R Munagala; I D Kuntz; C C Wang
Journal:  Antimicrob Agents Chemother       Date:  2001-09       Impact factor: 5.191

Review 6.  Targeting purine and pyrimidine metabolism in human apicomplexan parasites.

Authors:  John E Hyde
Journal:  Curr Drug Targets       Date:  2007-01       Impact factor: 3.465

7.  The structural mechanism of GTP stabilized oligomerization and catalytic activation of the Toxoplasma gondii uracil phosphoribosyltransferase.

Authors:  Maria A Schumacher; Caleb J Bashor; Minsun Hong Song; Kanao Otsu; Shuren Zhu; Ronald J Parry; Buddy Ullman; Richard G Brennan
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

8.  Structures of hypoxanthine-guanine phosphoribosyltransferase (TTHA0220) from Thermus thermophilus HB8.

Authors:  Mayumi Kanagawa; Seiki Baba; Akio Ebihara; Akeo Shinkai; Ken Hirotsu; Ryosuke Mega; Kwang Kim; Seiki Kuramitsu; Gen-ichi Sampei; Gota Kawai
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-07-27

9.  Crystal structures of Toxoplasma gondii uracil phosphoribosyltransferase reveal the atomic basis of pyrimidine discrimination and prodrug binding.

Authors:  M A Schumacher; D Carter; D M Scott; D S Roos; B Ullman; R G Brennan
Journal:  EMBO J       Date:  1998-06-15       Impact factor: 11.598

10.  Crystal structures of free, IMP-, and GMP-bound Escherichia coli hypoxanthine phosphoribosyltransferase.

Authors:  Luke W Guddat; Siska Vos; Jennifer L Martin; Dianne T Keough; John de Jersey
Journal:  Protein Sci       Date:  2002-07       Impact factor: 6.725

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