Literature DB >> 10692338

Induced fit in arginine kinase.

G Zhou1, W R Ellington, M S Chapman.   

Abstract

Creatine kinase (CK) and arginine kinase (AK) are related enzymes that reversibly transfer a phosphoryl group between a guanidino compound and ADP. In the buffering of ATP energy levels, they are central to energy metabolism and have been paradigms of classical enzymology. Comparison of the open substrate-free structure of CK and the closed substrate-bound structure of AK reveals differences that are consistent with prior biophysical evidence of substrate-induced conformational changes. Large and small domains undergo a hinged 13 degrees rotation. Several loops become ordered and adopt different positions in the presence of substrate, including one (residues 309-319) that moves 15 A to fold over the substrates. The conformational changes appear to be necessary in aligning the two substrates for catalysis, in configuring the active site only when productive phosphoryl transfer is possible, and excluding water from the active site to avoid wasteful ATP hydrolysis.

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Year:  2000        PMID: 10692338      PMCID: PMC1300751          DOI: 10.1016/S0006-3495(00)76706-3

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  Transition state structure of arginine kinase: implications for catalysis of bimolecular reactions.

Authors:  G Zhou; T Somasundaram; E Blanc; G Parthasarathy; W R Ellington; M S Chapman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

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  5 in total

1.  Arginine kinase: joint crystallographic and NMR RDC analyses link substrate-associated motions to intrinsic flexibility.

Authors:  Xiaogang Niu; Lei Bruschweiler-Li; Omar Davulcu; Jack J Skalicky; Rafael Brüschweiler; Michael S Chapman
Journal:  J Mol Biol       Date:  2010-11-12       Impact factor: 5.469

2.  Asparagine 285 plays a key role in transition state stabilization in rabbit muscle creatine kinase.

Authors:  Charles L Borders; Katherine M MacGregor; Paul L Edmiston; Elikem R K Gbeddy; Michael J Thomenius; Guy B Mulligan; Mark J Snider
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

3.  Induced fit in guanidino kinases--comparison of substrate-free and transition state analog structures of arginine kinase.

Authors:  Mohammad S Yousef; Shawn A Clark; Pamela K Pruett; Thayumanasamy Somasundaram; W Ross Ellington; Michael S Chapman
Journal:  Protein Sci       Date:  2003-01       Impact factor: 6.725

4.  Biochemical and structural characterization of a novel arginine kinase from the spider Polybetes pythagoricus.

Authors:  Aldana Laino; Alonso A Lopez-Zavala; Karina D Garcia-Orozco; Jesus S Carrasco-Miranda; Marianela Santana; Vivian Stojanoff; Rogerio R Sotelo-Mundo; Carlos Fernando Garcia
Journal:  PeerJ       Date:  2017-09-11       Impact factor: 2.984

5.  Conformational transitions upon ligand binding: holo-structure prediction from apo conformations.

Authors:  Daniel Seeliger; Bert L de Groot
Journal:  PLoS Comput Biol       Date:  2010-01-08       Impact factor: 4.475

  5 in total

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