Literature DB >> 8832162

An exactly solvable Ogston model of gel electrophoresis: I. The role of the symmetry and randomness of the gel structure.

G W Slater1, H L Guo.   

Abstract

The Ogston-Morris-Rodbard-Chrambach model (OMRCM) of gel electrophoresis assumes that the mobility (mu) of charged particles is directly proportional to the fractional volume (f) of the gel that is available to them. Many authors have studied the fractional volume f in detail for various particle shapes, but the original assumption, that mu sf, has not been scrutinized seriously. In fact, this geometrical model of electrophoresis does not take into account the connectivity of the gel pores or the precise gel architecture. Recently (G. W. Slater and H. L. Guo, Electrophoresis 1995, 16, 11-15) we developed a Monte Carlo computer simulation algorithm to study the electrophoretic motion of simple particles in gels in the presence of fields of arbitrary strength. Our preliminary results indicated that the mobility and the fractional volume were not generally proportional to one another. In this article, we show how to calculate, in the limit where the field intensity is vanishingly small, the exact electrophoretic mobility of particles in any type of gel in two or more dimensions. Our results, presented here for some simple two-dimensional systems, indicate that a particle can have different electrophoretic mobilities in gels in which it has access to the same fractional available volume f. The curvature of the Ferguson plot is shown to be related to the symmetry and the degree of randomness that characterize the gel. We also demonstrate that the OMRCM is, in fact, a mean field approximation that corresponds to a uniform, annealed gel. We thus conclude that the relation between the electrophoretic mobility and the gel concentration (C) is a delicate function of the gel architecture, and that one needs more than the fractional volume f to fully characterize the transport properties of migrating particles in separation media. Exact relationships between the mobility mu and the gel concentration C are given for our model gels.

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Year:  1996        PMID: 8832162     DOI: 10.1002/elps.1150170604

Source DB:  PubMed          Journal:  Electrophoresis        ISSN: 0173-0835            Impact factor:   3.535


  6 in total

1.  Depletion theory of protein transport in semi-dilute polymer solutions.

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Journal:  Biophys J       Date:  2000-11       Impact factor: 4.033

2.  Onset of channeling during DNA electrophoresis in a sparse ordered post array.

Authors:  Jia Ou; Samuel J Carpenter; Kevin D Dorfman
Journal:  Biomicrofluidics       Date:  2010-01-07       Impact factor: 2.800

3.  Exact lattice calculations of dispersion coefficients in the presence of external fields and obstacles.

Authors:  M G Gauthier; G W Slater; K D Dorfman
Journal:  Eur Phys J E Soft Matter       Date:  2004-09       Impact factor: 1.890

4.  Electrophoresis in lyotropic polymer liquid crystals.

Authors:  R L Rill; B R Locke; Y Liu; D H Van Winkle
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

Review 5.  Beyond gel electrophoresis: microfluidic separations, fluorescence burst analysis, and DNA stretching.

Authors:  Kevin D Dorfman; Scott B King; Daniel W Olson; Joel D P Thomas; Douglas R Tree
Journal:  Chem Rev       Date:  2012-11-12       Impact factor: 60.622

Review 6.  Effect of the matrix on DNA electrophoretic mobility.

Authors:  Nancy C Stellwagen; Earle Stellwagen
Journal:  J Chromatogr A       Date:  2008-12-06       Impact factor: 4.759

  6 in total

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