Literature DB >> 8810039

Functional characterization of the repeated UASINO element in the promoters of the INO1 and CHO2 genes of yeast.

J Koipally1, B P Ashburner, N Bachhawat, T Gill, G Hung, S A Henry, J M Lopes.   

Abstract

In yeast, INO1 and CHO2 gene expression is subject to repression in response to inositol and choline supplementation. The response by both genes to inositol is controlled by a single set of regulatory factors and the highly conserved and repeated UASINO element (consensus: 5' CATGTGAAAT 3') that is found in multiple copies in both promoters. However, none of the native elements found in the INO1 and CHO2 promoters constitutes an exact match to the consensus element and the functionality of individual elements from these two promoters has not been tested. In this study, the function of individual putative UASINO elements from both promoters was tested by placing promoter fragments into a reporter construct which lacked a UAS element but contained the TATA element and start of transcription from the yeast CYC1 gene fused to the Escherichia coli lacZ gene. In addition, a set of oligonucleotides containing the consensus UASINO element with the first position systematically modified was also tested for UASINO function. These studies indicated that elements that contain a C or an A as the first base at the 5' end are functional to varying degrees. The majority of potential UASINO elements from the INO1 promoter were found to be inactive, whereas all of the elements from the CHO2 promoter tested were active. These results are discussed in light of the differential regulation of the two promoters.

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Year:  1996        PMID: 8810039     DOI: 10.1002/(SICI)1097-0061(19960615)12:7%3C653::AID-YEA953%3E3.0.CO;2-T

Source DB:  PubMed          Journal:  Yeast        ISSN: 0749-503X            Impact factor:   3.239


  12 in total

1.  Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3 and RPD3 genes.

Authors:  M Elkhaimi; M R Kaadige; D Kamath; J C Jackson; H Biliran; J M Lopes
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

2.  Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex.

Authors:  Ameet Shetty; John M Lopes
Journal:  Eukaryot Cell       Date:  2010-10-08

3.  IN02, a positive regulator of lipid biosynthesis, is essential for the formation of inducible membranes in yeast.

Authors:  Laura Block-Alper; Paul Webster; Xianghong Zhou; Lubica Supeková; Wing Hung Wong; Peter G Schultz; David I Meyer
Journal:  Mol Biol Cell       Date:  2002-01       Impact factor: 4.138

4.  Activator-dependent recruitment of SWI/SNF and INO80 during INO1 activation.

Authors:  Jason Ford; Oluwafemi Odeyale; Chang-Hui Shen
Journal:  Biochem Biophys Res Commun       Date:  2008-06-30       Impact factor: 3.575

5.  A computational genomics approach to the identification of gene networks.

Authors:  A Wagner
Journal:  Nucleic Acids Res       Date:  1997-09-15       Impact factor: 16.971

Review 6.  The response to inositol: regulation of glycerolipid metabolism and stress response signaling in yeast.

Authors:  Susan A Henry; Maria L Gaspar; Stephen A Jesch
Journal:  Chem Phys Lipids       Date:  2014-01-10       Impact factor: 3.329

7.  The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter.

Authors:  K A Robinson; J M Lopes
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

8.  Transcriptional control of genes involved in yeast phospholipid biosynthesis.

Authors:  Roshini Wimalarathna; Chen-Han Tsai; Chang-Hui Shen
Journal:  J Microbiol       Date:  2011-05-03       Impact factor: 3.422

9.  Knockdown of p180 eliminates the terminal differentiation of a secretory cell line.

Authors:  Payam Benyamini; Paul Webster; David I Meyer
Journal:  Mol Biol Cell       Date:  2008-11-26       Impact factor: 4.138

10.  A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter.

Authors:  Jason Ford; Oluwafemi Odeyale; Antonious Eskandar; Nafila Kouba; Chang-Hui Shen
Journal:  Biochem Biophys Res Commun       Date:  2007-07-30       Impact factor: 3.575

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