Literature DB >> 17681272

A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter.

Jason Ford1, Oluwafemi Odeyale, Antonious Eskandar, Nafila Kouba, Chang-Hui Shen.   

Abstract

Transcriptional activation in yeast INO1 chromatin was studied using the indirect end-labeling technique. INO1 chromatin is organized into an ordered, overlapping nucleosomal array under repressing conditions. Nucleosome positions were only disrupted at the promoter region under inducing conditions in the presence of SWI/SNF and INO80. Mutants lacking either remodeler demonstrated identical positioning patterns as the wild type under repressing conditions. This indicates that these two remodelers are responsible and essential for local nucleosomal mobilization at the INO1 promoter. The area of local nucleosome movement is consistent with the previously identified region of histone deacetylation activity. In light of these findings, we suggest that nucleosomes subject to local mobilization are also targets for local histone modifications.

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Year:  2007        PMID: 17681272      PMCID: PMC2034749          DOI: 10.1016/j.bbrc.2007.07.109

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  36 in total

1.  DNA sequence plays a major role in determining nucleosome positions in yeast CUP1 chromatin.

Authors:  C H Shen; D J Clark
Journal:  J Biol Chem       Date:  2001-07-18       Impact factor: 5.157

Review 2.  Nucleosome positioning: occurrence, mechanisms, and functional consequences.

Authors:  R T Simpson
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1991

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Authors:  J M Lopes; J P Hirsch; P A Chorgo; K L Schulze; S A Henry
Journal:  Nucleic Acids Res       Date:  1991-04-11       Impact factor: 16.971

4.  Modulation of ATP-dependent chromatin-remodeling complexes by inositol polyphosphates.

Authors:  Xuetong Shen; Hua Xiao; Ryan Ranallo; Wei-Hua Wu; Carl Wu
Journal:  Science       Date:  2002-11-14       Impact factor: 47.728

5.  INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter.

Authors:  J Ambroziak; S A Henry
Journal:  J Biol Chem       Date:  1994-05-27       Impact factor: 5.157

6.  Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription.

Authors:  C L Peterson; I Herskowitz
Journal:  Cell       Date:  1992-02-07       Impact factor: 41.582

7.  Interaction of trans and cis regulatory elements in the INO1 promoter of Saccharomyces cerevisiae.

Authors:  J M Lopes; S A Henry
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

8.  Isolation and characterization of a mutant of Saccharomyces cerevisiae with pleiotropic deficiencies in transcriptional activation and repression.

Authors:  E Lamping; J Lückl; F Paltauf; S A Henry; S D Kohlwein
Journal:  Genetics       Date:  1994-05       Impact factor: 4.562

9.  Yeast transcriptional activator INO2 interacts as an Ino2p/Ino4p basic helix-loop-helix heteromeric complex with the inositol/choline-responsive element necessary for expression of phospholipid biosynthetic genes in Saccharomyces cerevisiae.

Authors:  S Schwank; R Ebbert; K Rautenstrauss; E Schweizer; H J Schüller
Journal:  Nucleic Acids Res       Date:  1995-01-25       Impact factor: 16.971

10.  Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter.

Authors:  H Richard-Foy; G L Hager
Journal:  EMBO J       Date:  1987-08       Impact factor: 11.598

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  13 in total

1.  The INO80 ATP-dependent chromatin remodeling complex is a nucleosome spacing factor.

Authors:  Maheshi Udugama; Abdellah Sabri; Blaine Bartholomew
Journal:  Mol Cell Biol       Date:  2010-12-06       Impact factor: 4.272

2.  Derepression of INO1 transcription requires cooperation between the Ino2p-Ino4p heterodimer and Cbf1p and recruitment of the ISW2 chromatin-remodeling complex.

Authors:  Ameet Shetty; John M Lopes
Journal:  Eukaryot Cell       Date:  2010-10-08

3.  A Gro/TLE-NuRD corepressor complex facilitates Tbx20-dependent transcriptional repression.

Authors:  Erin Kaltenbrun; Todd M Greco; Christopher E Slagle; Leslie M Kennedy; Tuo Li; Ileana M Cristea; Frank L Conlon
Journal:  J Proteome Res       Date:  2013-10-03       Impact factor: 4.466

4.  Activator-dependent recruitment of SWI/SNF and INO80 during INO1 activation.

Authors:  Jason Ford; Oluwafemi Odeyale; Chang-Hui Shen
Journal:  Biochem Biophys Res Commun       Date:  2008-06-30       Impact factor: 3.575

5.  Transcriptional control of genes involved in yeast phospholipid biosynthesis.

Authors:  Roshini Wimalarathna; Chen-Han Tsai; Chang-Hui Shen
Journal:  J Microbiol       Date:  2011-05-03       Impact factor: 3.422

6.  Fission yeast Iec1-ino80-mediated nucleosome eviction regulates nucleotide and phosphate metabolism.

Authors:  Cassandra Justine Hogan; Sofia Aligianni; Mickaël Durand-Dubief; Jenna Persson; William R Will; Judith Webster; Linda Wheeler; Christopher K Mathews; Sarah Elderkin; David Oxley; Karl Ekwall; Patrick Daniel Varga-Weisz
Journal:  Mol Cell Biol       Date:  2009-11-23       Impact factor: 4.272

7.  NTE1-encoded phosphatidylcholine phospholipase b regulates transcription of phospholipid biosynthetic genes.

Authors:  J Pedro Fernández-Murray; Gerard J Gaspard; Stephen A Jesch; Christopher R McMaster
Journal:  J Biol Chem       Date:  2009-10-19       Impact factor: 5.157

8.  The transcriptional activator Ino2p dissociates from the yeast INM1 promoter in induction.

Authors:  Lingzhi Zhang; Jing Di
Journal:  DNA Cell Biol       Date:  2014-12       Impact factor: 3.311

9.  Genome-wide association data reveal a global map of genetic interactions among protein complexes.

Authors:  Gregory Hannum; Rohith Srivas; Aude Guénolé; Haico van Attikum; Nevan J Krogan; Richard M Karp; Trey Ideker
Journal:  PLoS Genet       Date:  2009-12-24       Impact factor: 5.917

10.  SCS3 and YFT2 link transcription of phospholipid biosynthetic genes to ER stress and the UPR.

Authors:  Robyn D Moir; David A Gross; David L Silver; Ian M Willis
Journal:  PLoS Genet       Date:  2012-08-23       Impact factor: 5.917

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