Literature DB >> 8807893

Aptamer structures from A to zeta.

J Feigon1, T Dieckmann, F W Smith.   

Abstract

Solution structures of RNA aptamers for FMN, ATP, arginine, and citrulline reveal how oligonucleotides can fold to form selective binding pockets for biological cofactors and amino acids. These structures confirm old ideas and provide new insights about three-dimensional structures of nucleic acids and their possible role in chemical reactions.

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Year:  1996        PMID: 8807893     DOI: 10.1016/s1074-5521(96)90127-1

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  29 in total

1.  Relationship between internucleotide linkage geometry and the stability of RNA.

Authors:  G A Soukup; R R Breaker
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

2.  Solution structure of the SL1 RNA of the M1 double-stranded RNA virus of Saccharomyces cerevisiae.

Authors:  J S Yoo; H K Cheong; B J Lee; Y B Kim; C Cheong
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

3.  Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer.

Authors:  G R Zimmermann; C L Wick; T P Shields; R D Jenison; A Pardi
Journal:  RNA       Date:  2000-05       Impact factor: 4.942

4.  Evolution of aptamers with a new specificity and new secondary structures from an ATP aptamer.

Authors:  Zhen Huang; Jack W Szostak
Journal:  RNA       Date:  2003-12       Impact factor: 4.942

5.  Aptamer database.

Authors:  Jennifer F Lee; Jay R Hesselberth; Lauren Ancel Meyers; Andrew D Ellington
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

6.  Selection and evolution of NTP-specific aptamers.

Authors:  Laure Weill; Dominique Louis; Bruno Sargueil
Journal:  Nucleic Acids Res       Date:  2004-09-27       Impact factor: 16.971

7.  Computational docking simulations of a DNA-aptamer for argininamide and related ligands.

Authors:  H Bauke Albada; Eyal Golub; Itamar Willner
Journal:  J Comput Aided Mol Des       Date:  2015-04-16       Impact factor: 3.686

8.  Selection of genomic sequences that bind tightly to Ff gene 5 protein: primer-free genomic SELEX.

Authors:  Jin-Der Wen; Donald M Gray
Journal:  Nucleic Acids Res       Date:  2004-12-15       Impact factor: 16.971

9.  Assignment methodology for larger RNA oligonucleotides: application to an ATP-binding RNA aptamer.

Authors:  T Dieckmann; J Feigon
Journal:  J Biomol NMR       Date:  1997-04       Impact factor: 2.835

10.  Probing the structure of DNA aptamers with a classic heterocycle.

Authors:  Arthur E Wood; G Reid Bishop
Journal:  Molecules       Date:  2004-02-28       Impact factor: 4.411

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