Literature DB >> 8806426

The rpl5-rps14-cob gene arrangement in Solanum tuberosum: rps14 is a transcribed and unedited pseudogene.

V Quiñones1, S Zanlungo, A Moenne, I Gómez, L Holuigue, S Litvak, X Jordana.   

Abstract

The L5 ribosomal protein gene (rpl5) and a S14 ribosomal protein pseudogene were identified by sequence analysis in the potato mitochondrial genome. The two genes are separated by one nucleotide and are found upstream of the apocytochrome b gene (cob), an arrangement conserved also in Arabidopsis and Brassica. The rpl5 gene has an intact open reading frame while the rps14 locus is disrupted by a five nucleotide duplication that introduces a frameshift in the reading frame. Editing of rpl5 and pseudorps14 cotranscripts has been studied by cDNA sequence analysis. Eight C residues are edited into U in the rpl5 coding region, resulting in eight amino acid changes that increase the homology between potato and other RPL5 polypeptides. Interestingly, the rps14 pseudogene sequence is not edited at any nucleotide position.

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Year:  1996        PMID: 8806426     DOI: 10.1007/bf00019483

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  23 in total

1.  Ribosomal protein S14 transcripts are edited in Oenothera mitochondria.

Authors:  W Schuster; M Unseld; B Wissinger; A Brennicke
Journal:  Nucleic Acids Res       Date:  1990-01-25       Impact factor: 16.971

2.  The genes coding for subunit 3 of NADH dehydrogenase and for ribosomal protein S12 are present in the wheat and maize mitochondrial genomes and are co-transcribed.

Authors:  J M Gualberto; H Wintz; J H Weil; J M Grienenberger
Journal:  Mol Gen Genet       Date:  1988-12

3.  Splicing and editing of rps10 transcripts in potato mitochondria.

Authors:  S Zanlungo; V Quiñones; A Moenne; L Holuigue; X Jordana
Journal:  Curr Genet       Date:  1995-05       Impact factor: 3.886

4.  A gene involved in the biogenesis of c-type cytochromes is co-transcribed with a ribosomal protein gene in wheat mitochondria [corrected].

Authors:  D H Gonzalez; G Bonnard; J M Grienenberger
Journal:  Curr Genet       Date:  1993-09       Impact factor: 3.886

5.  Editing of rps3/rpl16 transcripts creates a premature truncation of the rpl16 open reading frame.

Authors:  C A Sutton; P L Conklin; K D Pruitt; A J Calfee; A G Cobb; M R Hanson
Journal:  Curr Genet       Date:  1993 May-Jun       Impact factor: 3.886

6.  RNA editing makes mistakes in plant mitochondria: editing loses sense in transcripts of a rps19 pseudogene and in creating stop codons in coxI and rps3 mRNAs of Oenothera.

Authors:  W Schuster; A Brennicke
Journal:  Nucleic Acids Res       Date:  1991-12-25       Impact factor: 16.971

7.  The mitochondrial gene encoding ribosomal protein S12 has been translocated to the nuclear genome in Oenothera.

Authors:  L Grohmann; A Brennicke; W Schuster
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

8.  Mitochondrial rps14 is a transcribed and edited pseudogene in Arabidopsis thaliana.

Authors:  D Aubert; C Bisanz-Seyer; M Herzog
Journal:  Plant Mol Biol       Date:  1992-12       Impact factor: 4.076

9.  Ribosomal protein S14 genes in broad bean mitochondrial DNA.

Authors:  J A Wahleithner; D R Wolstenholme
Journal:  Nucleic Acids Res       Date:  1988-07-25       Impact factor: 16.971

10.  The NCS3 mutation: genetic evidence for the expression of ribosomal protein genes in Zea mays mitochondria.

Authors:  M D Hunt; K J Newton
Journal:  EMBO J       Date:  1991-05       Impact factor: 11.598

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  15 in total

1.  Patterns of partial RNA editing in mitochondrial genes of Beta vulgaris.

Authors:  Jeffrey P Mower; Jeffrey D Palmer
Journal:  Mol Genet Genomics       Date:  2006-07-22       Impact factor: 3.291

2.  Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).

Authors:  Andrew J Alverson; XiaoXin Wei; Danny W Rice; David B Stern; Kerrie Barry; Jeffrey D Palmer
Journal:  Mol Biol Evol       Date:  2010-01-29       Impact factor: 16.240

3.  A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: common use of the same mitochondrial targeting signal for different proteins.

Authors:  N Kubo; K Harada; A Hirai; K Kadowaki
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-03       Impact factor: 11.205

4.  Discovery of a novel mitochondrial DNA molecule associated with tetrad pollen sterility in potato.

Authors:  Rena Sanetomo; Kotaro Akai; Akito Nashiki
Journal:  BMC Plant Biol       Date:  2022-06-21       Impact factor: 5.260

5.  Organization of repetitive DNAs and the genomic regions carrying ribosomal RNA, cob, and atp9 genes in the cucurbit mitochondrial genomes.

Authors:  Grzegorz Bartoszewski; Nurit Katzir; Michael J Havey
Journal:  Theor Appl Genet       Date:  2003-11-27       Impact factor: 5.699

6.  Are Synonymous Substitutions in Flowering Plant Mitochondria Neutral?

Authors:  Emily L Wynn; Alan C Christensen
Journal:  J Mol Evol       Date:  2015-10-12       Impact factor: 2.395

7.  Organelle DNA variation in parental Solanum spp. genotypes and nuclear-cytoplasmic interactions in Solanum tuberosum (+) S. commersonii somatic hybrid-backcross progeny.

Authors:  N Scotti; L Monti; T Cardi
Journal:  Theor Appl Genet       Date:  2003-09-03       Impact factor: 5.699

8.  The rpl5- rps14 mitochondrial region: a hot spot for DNA rearrangements in Solanum spp. somatic hybrids.

Authors:  N Scotti; L Maréchal-Drouard; T Cardi
Journal:  Curr Genet       Date:  2004-03-18       Impact factor: 3.886

9.  Complete chloroplast genome sequence of holoparasite Cistanche deserticola (Orobanchaceae) reveals gene loss and horizontal gene transfer from its host Haloxylon ammodendron (Chenopodiaceae).

Authors:  Xi Li; Ti-Cao Zhang; Qin Qiao; Zhumei Ren; Jiayuan Zhao; Takahiro Yonezawa; Masami Hasegawa; M James C Crabbe; Jianqiang Li; Yang Zhong
Journal:  PLoS One       Date:  2013-03-15       Impact factor: 3.240

10.  The "fossilized" mitochondrial genome of Liriodendron tulipifera: ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate.

Authors:  Aaron O Richardson; Danny W Rice; Gregory J Young; Andrew J Alverson; Jeffrey D Palmer
Journal:  BMC Biol       Date:  2013-04-15       Impact factor: 7.431

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