Literature DB >> 8797818

DNA demethylation in vitro: involvement of RNA.

A Weiss1, I Keshet, A Razin, H Cedar.   

Abstract

An in vitro system for studying DNA demethylation has been established using extracts from tissue culture cells. This reaction, which is unusually resistant to proteinase K, takes place through the removal of a 5-methylcytosine nucleotide unit from the DNA substrate and its conversion to an RNase-sensitive form. It is likely that this represents the in vivo mechanism, as well, since extracts from L8 myoblasts specifically demethylate an alpha-actin gene, while extracts from F9 teratocarcinoma cells specifically demodify the Aprt CpG island. After pretreatment with proteinase K, these extracts demethylate both genes equally, suggesting that gene specificity may be controlled by protein factors.

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Year:  1996        PMID: 8797818     DOI: 10.1016/s0092-8674(00)80146-4

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  42 in total

1.  Lsh, a member of the SNF2 family, is required for genome-wide methylation.

Authors:  K Dennis; T Fan; T Geiman; Q Yan; K Muegge
Journal:  Genes Dev       Date:  2001-11-15       Impact factor: 11.361

Review 2.  DNA demethylation.

Authors:  A P Wolffe; P L Jones; P A Wade
Journal:  Proc Natl Acad Sci U S A       Date:  1999-05-25       Impact factor: 11.205

3.  Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules.

Authors:  Charles D Laird; Nicole D Pleasant; Aaron D Clark; Jessica L Sneeden; K M Anwarul Hassan; Nathan C Manley; Jay C Vary; Todd Morgan; R Scott Hansen; Reinhard Stöger
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

Review 4.  Linking DNA methylation and histone modification: patterns and paradigms.

Authors:  Howard Cedar; Yehudit Bergman
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

Review 5.  Basic mechanics of DNA methylation and the unique landscape of the DNA methylome in metal-induced carcinogenesis.

Authors:  Jason Brocato; Max Costa
Journal:  Crit Rev Toxicol       Date:  2013-07       Impact factor: 5.635

6.  Chromosome methylation patterns during mammalian preimplantation development.

Authors:  N Rougier; D Bourc'his; D M Gomes; A Niveleau; M Plachot; A Pàldi; E Viegas-Péquignot
Journal:  Genes Dev       Date:  1998-07-15       Impact factor: 11.361

7.  An alternative promoter in the mouse major histocompatibility complex class II I-Abeta gene: implications for the origin of CpG islands.

Authors:  D Macleod; R R Ali; A Bird
Journal:  Mol Cell Biol       Date:  1998-08       Impact factor: 4.272

8.  Evidence that protein binding specifies sites of DNA demethylation.

Authors:  C L Hsieh
Journal:  Mol Cell Biol       Date:  1999-01       Impact factor: 4.272

9.  An embryonic demethylation mechanism involving binding of transcription factors to replicating DNA.

Authors:  K Matsuo; J Silke; O Georgiev; P Marti; N Giovannini; D Rungger
Journal:  EMBO J       Date:  1998-03-02       Impact factor: 11.598

10.  Embryonic germ cells induce epigenetic reprogramming of somatic nucleus in hybrid cells.

Authors:  M Tada; T Tada; L Lefebvre; S C Barton; M A Surani
Journal:  EMBO J       Date:  1997-11-03       Impact factor: 11.598

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