Literature DB >> 8785340

Free-energy determinants of alpha-helix insertion into lipid bilayers.

N Ben-Tal1, A Ben-Shaul, A Nicholls, B Honig.   

Abstract

A detailed treatment is provided of the various free-energy terms that contribute to the transfer of a polyalanine alpha-helix from the aqueous phase into lipid bilayers. In agreement with previous work, the hydrophobic effect is found to provide the major driving force for helix insertion. However, an opposing effect of comparable magnitude is also identified and is attributed to the large free-energy penalty associated with the desolvation of peptide hydrogen bonds on transfer to the low dielectric environment of the bilayer. Lipid perturbation effects as well as the entropy loss associated with helix immobilization in the bilayer are also evaluated. Two configurations of a membrane-bound 25mer polyalanine helix were found to be lower in free energy than the isolated helix in the aqueous phase. The first corresponds to the case of vertical insertion, in which a helix terminus protrudes from each side of the bilayer. The second minimum is for the case of horizontal insertion, for which the helix is adsorbed upon the surface of the bilayer. The calculated free-energy minima are found to be in good agreement with recent measurements of related systems. Large free-energy barriers resulting from desolvation of unsatisfied hydrogen-bonding groups at the helix termini are obtained for both insertion processes. The barriers for insertion are significantly reduced if the helix termini are assumed to be "capped" through the formation of hydrogen bonds with polar sidechains. For uncapped helices, our results support recently proposed models in which helices are inserted by first adsorbing on the membrane surface and then having one terminus "swing around" so as to penetrate the bilayer.

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Year:  1996        PMID: 8785340      PMCID: PMC1225150          DOI: 10.1016/S0006-3495(96)79744-8

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Direct determination of the membrane affinities of individual amino acids.

Authors:  T E Thorgeirsson; C J Russell; D S King; Y K Shin
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2.  Incorporation of melittin into phosphatidylcholine bilayers. Study of binding and conformational changes.

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3.  Mechanism of cytochrome b5 binding to phosphatidylcholine vesicles.

Authors:  T L Leto; P W Holloway
Journal:  J Biol Chem       Date:  1979-06-25       Impact factor: 5.157

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Authors:  A T Hagler; E Huler; S Lifson
Journal:  J Am Chem Soc       Date:  1974-08-21       Impact factor: 15.419

5.  Environment and exposure to solvent of protein atoms. Lysozyme and insulin.

Authors:  A Shrake; J A Rupley
Journal:  J Mol Biol       Date:  1973-09-15       Impact factor: 5.469

6.  Stability of an amide-hydrogen bond in an apolar environment.

Authors:  I M Klotz; S B Farnham
Journal:  Biochemistry       Date:  1968-11       Impact factor: 3.162

Review 7.  Free energy balance in protein folding.

Authors:  B Honig; A S Yang
Journal:  Adv Protein Chem       Date:  1995

8.  Topology of an amphiphilic mitochondrial signal sequence in the membrane-inserted state: a spin labeling study.

Authors:  Y G Yu; T E Thorgeirsson; Y K Shin
Journal:  Biochemistry       Date:  1994-11-29       Impact factor: 3.162

9.  Free energy determinants of secondary structure formation: I. alpha-Helices.

Authors:  A S Yang; B Honig
Journal:  J Mol Biol       Date:  1995-09-22       Impact factor: 5.469

10.  Semisynthetic proteins: model systems for the study of the insertion of hydrophobic peptides into preformed lipid bilayers.

Authors:  T S Moll; T E Thompson
Journal:  Biochemistry       Date:  1994-12-27       Impact factor: 3.162

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  72 in total

1.  Statistical mechanical equilibrium theory of selective ion channels.

Authors:  B Roux
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2.  Implicit solvent model studies of the interactions of the influenza hemagglutinin fusion peptide with lipid bilayers.

Authors:  D Bechor; N Ben-Tal
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

3.  Spatial structure of zervamicin IIB bound to DPC micelles: implications for voltage-gating.

Authors:  Z O Shenkarev; T A Balashova; R G Efremov; Z A Yakimenko; T V Ovchinnikova; J Raap; A S Arseniev
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

4.  Continuum solvent model calculations of alamethicin-membrane interactions: thermodynamic aspects.

Authors:  A Kessel; D S Cafiso; N Ben-Tal
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

5.  Interactions of hydrophobic peptides with lipid bilayers: Monte Carlo simulations with M2delta.

Authors:  Amit Kessel; Dalit Shental-Bechor; Turkan Haliloglu; Nir Ben-Tal
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

6.  Interactions of the M2delta segment of the acetylcholine receptor with lipid bilayers: a continuum-solvent model study.

Authors:  Amit Kessel; Turkan Haliloglu; Nir Ben-Tal
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

7.  Membrane peptides and their role in protobiological evolution.

Authors:  Andrew Pohorille; Michael A Wilson; Christophe Chipot
Journal:  Orig Life Evol Biosph       Date:  2003-04       Impact factor: 1.950

8.  Quantitative modeling of membrane deformations by multihelical membrane proteins: application to G-protein coupled receptors.

Authors:  Sayan Mondal; George Khelashvili; Jufang Shan; Olaf S Andersen; Harel Weinstein
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

9.  Molecular dynamics study of substance P peptides in a biphasic membrane mimic.

Authors:  T Wymore; T C Wong
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

10.  Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: lessons from the transmembrane protein OmpA.

Authors:  Katheryn M Sanchez; Jonathan E Gable; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2008-12-02       Impact factor: 3.162

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