Literature DB >> 10388746

Statistical mechanical equilibrium theory of selective ion channels.

B Roux1.   

Abstract

A rigorous statistical mechanical formulation of the equilibrium properties of selective ion channels is developed, incorporating the influence of the membrane potential, multiple occupancy, and saturation effects. The theory provides a framework for discussing familiar quantities and concepts in the context of detailed microscopic models. Statistical mechanical expressions for the free energy profile along the channel axis, the cross-sectional area of the pore, and probability of occupancy are given and discussed. In particular, the influence of the membrane voltage, the significance of the electric distance, and traditional assumptions concerning the linearity of the membrane electric field along the channel axis are examined. Important findings are: 1) the equilibrium probabilities of occupancy of multiply occupied channels have the familiar algebraic form of saturation properties which is obtained from kinetic models with discrete states of denumerable ion occupancy (although this does not prove the existence of specific binding sites; 2) the total free energy profile of an ion along the channel axis can be separated into an intrinsic ion-pore free energy potential of mean force, independent of the transmembrane potential, and other contributions that arise from the interfacial polarization; 3) the transmembrane potential calculated numerically for a detailed atomic configuration of the gramicidin A channel embedded in a bilayer membrane with explicit lipid molecules is shown to be closely linear over a distance of 25 A along the channel axis. Therefore, the present analysis provides some support for the constant membrane potential field approximation, a concept that has played a central role in the interpretation of flux data based on traditional models of ion permeation. It is hoped that this formulation will provide a sound physical basis for developing nonequilibrium theories of ion transport in selective biological channels.

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Year:  1999        PMID: 10388746      PMCID: PMC1300318          DOI: 10.1016/S0006-3495(99)76878-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  40 in total

1.  Amino acid substitutions and ion channel function. Model-dependent conclusions.

Authors:  M D Becker; R E Koeppe; O S Andersen
Journal:  Biophys J       Date:  1992-04       Impact factor: 4.033

2.  Crystal structures explain functional properties of two E. coli porins.

Authors:  S W Cowan; T Schirmer; G Rummel; M Steiert; R Ghosh; R A Pauptit; J N Jansonius; J P Rosenbusch
Journal:  Nature       Date:  1992-08-27       Impact factor: 49.962

3.  Time-correlation analysis of simulated water motion in flexible and rigid gramicidin channels.

Authors:  S W Chiu; E Jakobsson; S Subramaniam; J A McCammon
Journal:  Biophys J       Date:  1991-07       Impact factor: 4.033

4.  A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer.

Authors:  D P Tieleman; H J Berendsen
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

5.  Free energy profiles for H+ conduction along hydrogen-bonded chains of water molecules.

Authors:  R Pomès; B Roux
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

6.  A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.

Authors:  M G Kurnikova; R D Coalson; P Graf; A Nitzan
Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

7.  The structure of the potassium channel: molecular basis of K+ conduction and selectivity.

Authors:  D A Doyle; J Morais Cabral; R A Pfuetzner; A Kuo; J M Gulbis; S L Cohen; B T Chait; R MacKinnon
Journal:  Science       Date:  1998-04-03       Impact factor: 47.728

8.  Molecular dynamics study of the LS3 voltage-gated ion channel.

Authors:  Q Zhong; P B Moore; D M Newns; M L Klein
Journal:  FEBS Lett       Date:  1998-05-08       Impact factor: 4.124

9.  Solid-state 13C-NMR studies of the effects of sodium ions on the gramicidin A ion channel.

Authors:  R Smith; D E Thomas; A R Atkins; F Separovic; B A Cornell
Journal:  Biochim Biophys Acta       Date:  1990-07-24

10.  Location of ion-binding sites in the gramicidin channel by X-ray diffraction.

Authors:  G A Olah; H W Huang; W H Liu; Y L Wu
Journal:  J Mol Biol       Date:  1991-04-20       Impact factor: 6.151

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  41 in total

1.  Framework model for single proton conduction through gramicidin.

Authors:  M F Schumaker; R Pomès; B Roux
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  A combined molecular dynamics and diffusion model of single proton conduction through gramicidin.

Authors:  M F Schumaker; R Pomès; B Roux
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

3.  A Grand Canonical Monte Carlo-Brownian dynamics algorithm for simulating ion channels.

Authors:  W Im; S Seefeld; B Roux
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

4.  Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

Authors:  P S Crozier; D Henderson; R L Rowley; D D Busath
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

5.  Surface potentials and the calculated selectivity of ion channels.

Authors:  Henk Miedema
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

6.  A coarse-grained model for a nanometer-scale molecular pump.

Authors:  Oded Hod; Eran Rabani
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-25       Impact factor: 11.205

7.  Energetics of ion conduction through the gramicidin channel.

Authors:  Toby W Allen; Olaf S Andersen; Benoît Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

8.  Mechanism of anionic conduction across ClC.

Authors:  Jordi Cohen; Klaus Schulten
Journal:  Biophys J       Date:  2004-02       Impact factor: 4.033

9.  A microscopic view of ion conduction through the K+ channel.

Authors:  Simon Bernèche; Benoît Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-01       Impact factor: 11.205

10.  On the calculation of absolute macromolecular binding free energies.

Authors:  Hengbin Luo; Kim Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-29       Impact factor: 11.205

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