Literature DB >> 8776838

Distribution of genome shared IBD by half-sibs: approximation by the Poisson clumping heuristic.

H Bickeböller1, E A Thompson.   

Abstract

The distribution of the proportion of genome shared identical by descent (IBD) by c half-sibs is calculated for a general c. With data availability the consideration of the chromosome as a whole rather than discrete loci becomes of increasing practical importance. Assuming the genomic continuum model, which allows for recombination, the crossover process in a chromosome pedigree is viewed as a continuous-time Markov random walk on the vertices of a hypercube with time parameter map distance along the chromosome. The desired distribution corresponds to the distribution of sojourn times of the process in a small set of vertices. The sojourn times are well approximated via the Poisson clumping heuristic. It is shown explicitly that there is no "equivalent" number of independently segregating loci that will yield the same results as with the genomic continuum model. Results are given for the human genome.

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Year:  1996        PMID: 8776838     DOI: 10.1006/tpbi.1996.0023

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  10 in total

1.  Distribution of genome shared identical by descent by two individuals in grandparent-type relationship.

Authors:  V T Stefanov
Journal:  Genetics       Date:  2000-11       Impact factor: 4.562

Review 2.  The estimation of genetic relationships using molecular markers and their efficiency in estimating heritability in natural populations.

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Review 3.  Identity by descent: variation in meiosis, across genomes, and in populations.

Authors:  Elizabeth A Thompson
Journal:  Genetics       Date:  2013-06       Impact factor: 4.562

4.  Distribution of parental genome blocks in recombinant inbred lines.

Authors:  Olivier C Martin; Frédéric Hospital
Journal:  Genetics       Date:  2011-08-11       Impact factor: 4.562

5.  The lengths of admixture tracts.

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6.  Variation in actual relationship as a consequence of Mendelian sampling and linkage.

Authors:  W G Hill; B S Weir
Journal:  Genet Res (Camb)       Date:  2011-02       Impact factor: 1.588

7.  Statistics on continuous IBD data: exact distribution evaluation for a pair of full(half)-sibs and a pair of a (great-) grandchild with a (great-) grandparent.

Authors:  Valeri T Stefanov
Journal:  BMC Genet       Date:  2002-05-07       Impact factor: 2.797

8.  Blocks of chromosomes identical by descent in a population: Models and predictions.

Authors:  Mathieu Tiret; Frédéric Hospital
Journal:  PLoS One       Date:  2017-11-02       Impact factor: 3.240

9.  Recursive Algorithms for Modeling Genomic Ancestral Origins in a Fixed Pedigree.

Authors:  Chaozhi Zheng; Martin P Boer; Fred A van Eeuwijk
Journal:  G3 (Bethesda)       Date:  2018-10-03       Impact factor: 3.154

10.  Estimating the timing of multiple admixture events using 3-locus linkage disequilibrium.

Authors:  Mason Liang; Mikhail Shishkin; Anastasia Mikhailova; Vladimir Shchur; Rasmus Nielsen
Journal:  PLoS Genet       Date:  2022-07-15       Impact factor: 6.020

  10 in total

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