Literature DB >> 8770195

Concentration dependence of the subunit association of oligomers and viruses and the modification of the latter by urea binding.

G Weber1, A T Da Poian, J L Silva.   

Abstract

A theoretical model is presented that accounts for the facilitation of the pressure dissociation of R17 phage, and for the partial restoration of the concentration dependence of the dissociation, by the presence of subdenaturing concentrations of urea. As an indifferent osmolyte urea should promote the stability of the protein aggregates under pressure, and the decrease in pressure stability with urea concentration demonstrates that such indirect solvent effects are not significant for this case, and that the progressive destabilization is the result of direct protein-urea interactions. By acting as a "homogenizer" of the properties of the phage particles, urea addition converts the pressure-induced deterministic dissociation of the phage into a limited stochastic equilibrium. The model establishes the origin of the uniform progression from the stochastic equilibrium of dimers, to the temperature-dependent and partially concentration-dependent association of tetramers, to the fully deterministic equilibrium observed in many multimers and in the virus capsids.

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Year:  1996        PMID: 8770195      PMCID: PMC1224917          DOI: 10.1016/S0006-3495(96)79557-7

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

1.  Hysteresis and conformational drift of pressure-dissociated glyceraldehydephosphate dehydrogenase.

Authors:  K Ruan; G Weber
Journal:  Biochemistry       Date:  1989-03-07       Impact factor: 3.162

2.  Oligomeric protein associations: transition from stochastic to deterministic equilibrium.

Authors:  L Erijman; G Weber
Journal:  Biochemistry       Date:  1991-02-12       Impact factor: 3.162

3.  Pressure-induced dissociation of brome mosaic virus.

Authors:  J L Silva; G Weber
Journal:  J Mol Biol       Date:  1988-01-05       Impact factor: 5.469

4.  Anomalous pressure dissociation of large protein aggregates. Lack of concentration dependence and irreversibility at extreme degrees of dissociation of extracellular hemoglobin.

Authors:  J L Silva; M Villas-Boas; C F Bonafe; N C Meirelles
Journal:  J Biol Chem       Date:  1989-09-25       Impact factor: 5.157

5.  Phenomenological description of the association of protein subunits subjected to conformational drift. Effects of dilution and of hydrostatic pressure.

Authors:  G Weber
Journal:  Biochemistry       Date:  1986-06-17       Impact factor: 3.162

6.  Conformational drift of dissociated lactate dehydrogenases.

Authors:  L King; G Weber
Journal:  Biochemistry       Date:  1986-06-17       Impact factor: 3.162

7.  Pressure dissociation and conformational drift of the beta dimer of tryptophan synthase.

Authors:  J L Silva; E W Miles; G Weber
Journal:  Biochemistry       Date:  1986-09-23       Impact factor: 3.162

8.  Inactivation of simian immunodeficiency virus by hydrostatic pressure.

Authors:  E Jurkiewicz; M Villas-Boas; J L Silva; G Weber; G Hunsmann; R M Clegg
Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-18       Impact factor: 11.205

9.  Association-dissociation equilibria of Octopus hemocyanin.

Authors:  K E van Holde; K I Miller
Journal:  Biochemistry       Date:  1985-08-13       Impact factor: 3.162

10.  Subunit structure and physical properties of the hemocyanin of the giant isopod Bathynomus giganteus.

Authors:  K E Van Holde; M Brenowitz
Journal:  Biochemistry       Date:  1981-09-01       Impact factor: 3.162

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  7 in total

1.  Viruses and the physics of soft condensed matter.

Authors:  Adam Zlotnick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-25       Impact factor: 11.205

2.  Long-lived conformational isomerism of protein dimers: the role of the free energy of subunit association.

Authors:  Michelle G Botelho; Alex W M Rietveld; Sérgio T Ferreira
Journal:  Biophys J       Date:  2006-07-21       Impact factor: 4.033

3.  A hypothesis to reconcile the physical and chemical unfolding of proteins.

Authors:  Guilherme A P de Oliveira; Jerson L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

4.  Phage P22 procapsids equilibrate with free coat protein subunits.

Authors:  Kristin N Parent; Margaret M Suhanovsky; Carolyn M Teschke
Journal:  J Mol Biol       Date:  2006-10-04       Impact factor: 5.469

5.  Stratum corneum protein dynamics as evaluated by a spin-label maleimide derivative: effect of urea.

Authors:  A Alonso; W P dos Santos; S J Leonor; J G dos Santos; M Tabak
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

6.  Low temperature and pressure stability of picornaviruses: implications for virus uncoating.

Authors:  A C Oliveira; D Ishimaru; R B Gonçalves; T J Smith; P Mason; D Sá-Carvalho; J L Silva
Journal:  Biophys J       Date:  1999-03       Impact factor: 4.033

7.  Hepatitis B virus capsid assembly is enhanced by naturally occurring mutation F97L.

Authors:  Pablo Ceres; Stephen J Stray; Adam Zlotnick
Journal:  J Virol       Date:  2004-09       Impact factor: 5.103

  7 in total

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