Literature DB >> 8768900

Local sequence-structure correlations in proteins.

C Bystroff1, K T Simons, K F Han, D Baker.   

Abstract

Considerable progress has been made in understanding the relationship between local amino acid sequence and local protein structure. Recent highlights include numerous studies of the structures adopted by short peptides, new approaches to correlating sequence patterns with structure patterns, and folding simulations using simple potentials.

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Year:  1996        PMID: 8768900     DOI: 10.1016/s0958-1669(96)80117-0

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  21 in total

1.  Molecular Simulations Find Stable Structures in Fragments of Protein G.

Authors:  Tjaša Urbič; Tomaž Urbič; Franc Avbelj; Ken A Dill
Journal:  Acta Chim Slov       Date:  2008-01-26       Impact factor: 1.735

2.  The folding mechanics of a knotted protein.

Authors:  Stefan Wallin; Konstantin B Zeldovich; Eugene I Shakhnovich
Journal:  J Mol Biol       Date:  2007-02-22       Impact factor: 5.469

3.  Fragment-HMM: a new approach to protein structure prediction.

Authors:  Shuai Cheng Li; Dongbo Bu; Jinbo Xu; Ming Li
Journal:  Protein Sci       Date:  2008-08-22       Impact factor: 6.725

4.  Systematic assessment of accuracy of comparative model of proteins belonging to different structural fold classes.

Authors:  Suvobrata Chakravarty; Dario Ghersi; Roberto Sanchez
Journal:  J Mol Model       Date:  2011-02-08       Impact factor: 1.810

5.  Three-dimensional structures and contexts associated with recurrent amino acid sequence patterns.

Authors:  K F Han; C Bystroff; D Baker
Journal:  Protein Sci       Date:  1997-07       Impact factor: 6.725

6.  Characteristics of a PHD Finger Subtype.

Authors:  Daniel Boamah; Tao Lin; Franchesca A Poppinga; Shraddha Basu; Shahariar Rahman; Francisca Essel; Suvobrata Chakravarty
Journal:  Biochemistry       Date:  2018-01-05       Impact factor: 3.162

Review 7.  Practically useful: what the Rosetta protein modeling suite can do for you.

Authors:  Kristian W Kaufmann; Gordon H Lemmon; Samuel L Deluca; Jonathan H Sheehan; Jens Meiler
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

8.  Extracting knowledge from protein structure geometry.

Authors:  Peter Røgen; Patrice Koehl
Journal:  Proteins       Date:  2013-02-27

Review 9.  Rigorous performance evaluation in protein structure modelling and implications for computational biology.

Authors:  John Moult
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-03-29       Impact factor: 6.237

10.  The dual role of fragments in fragment-assembly methods for de novo protein structure prediction.

Authors:  Julia Handl; Joshua Knowles; Robert Vernon; David Baker; Simon C Lovell
Journal:  Proteins       Date:  2011-11-17
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