Literature DB >> 8749372

What makes a binding site a binding site?

D Ringe1.   

Abstract

Organic probe molecules have recently been used to define hydrophobic binding sites on the surface of proteins. It appears that the presence of water on the surface of a protein plays a crucial role in the interaction between that protein and its binding site.

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Year:  1995        PMID： 8749372     DOI： 10.1016/0959-440x(95)80017-4

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  32 in total

1.  Fast prediction and visualization of protein binding pockets with PASS.

Authors:  G P Brady; P F Stouten
Journal:  J Comput Aided Mol Des       Date:  2000-05       Impact factor: 3.686

Review 2.  Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations.

Authors:  Buyong Ma; Maxim Shatsky; Haim J Wolfson; Ruth Nussinov
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

3.  Probing the surface of a sweet protein: NMR study of MNEI with a paramagnetic probe.

Authors:  N Niccolai; R Spadaccini; M Scarselli; A Bernini; O Crescenzi; O Spiga; A Ciutti; D Di Maro; L Bracci; C Dalvit; P A Temussi
Journal:  Protein Sci       Date:  2001-08       Impact factor: 6.725

4.  An information theory model of hydrophobic interactions.

Authors:  G Hummer; S Garde; A E García; A Pohorille; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1996-08-20       Impact factor: 11.205

5.  Thermodynamic aspects of hydrophobicity and biological QSAR.

Authors:  K H Kim
Journal:  J Comput Aided Mol Des       Date:  2001-04       Impact factor: 3.686

6.  Solvent dependence of dynamic transitions in protein solutions.

Authors:  V Réat; R Dunn; M Ferrand; J L Finney; R M Daniel; J C Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2000-08-29       Impact factor: 11.205

7.  Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces.

Authors:  Buyong Ma; Tal Elkayam; Haim Wolfson; Ruth Nussinov
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-01       Impact factor: 11.205

8.  Insufficiently dehydrated hydrogen bonds as determinants of protein interactions.

Authors:  Ariel Fernández; Harold A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

9.  Anchor residues in protein-protein interactions.

Authors:  Deepa Rajamani; Spencer Thiel; Sandor Vajda; Carlos J Camacho
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-21       Impact factor: 11.205

10.  Localization of binding sites in protein structures by optimization of a composite scoring function.

Authors:  Andrea Rossi; Marc A Marti-Renom; Andrej Sali
Journal:  Protein Sci       Date:  2006-09-08       Impact factor: 6.725
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