Literature DB >> 8743709

SSAP: sequential structure alignment program for protein structure comparison.

C A Orengo1, W R Taylor.   

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Year:  1996        PMID: 8743709     DOI: 10.1016/s0076-6879(96)66038-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


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  75 in total

1.  CORA--topological fingerprints for protein structural families.

Authors:  C A Orengo
Journal:  Protein Sci       Date:  1999-04       Impact factor: 6.725

2.  Protein structure comparison using iterated double dynamic programming.

Authors:  W R Taylor
Journal:  Protein Sci       Date:  1999-03       Impact factor: 6.725

3.  Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function.

Authors:  Iddo Friedberg; Hanah Margalit
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

4.  Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level.

Authors:  N M Luscombe; R A Laskowski; J M Thornton
Journal:  Nucleic Acids Res       Date:  2001-07-01       Impact factor: 16.971

5.  X-ray crystal structure of CutA from Thermotoga maritima at 1.4 A resolution.

Authors:  Alexei Savchenko; Tatiana Skarina; Elena Evdokimova; James D Watson; Roman Laskowski; Cheryl H Arrowsmith; Aled M Edwards; Andrzej Joachimiak; Rong-guang Zhang
Journal:  Proteins       Date:  2004-01-01

6.  Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures.

Authors:  Alexander Stark; Robert B Russell
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 7.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

8.  The structure of bacterial DnaA: implications for general mechanisms underlying DNA replication initiation.

Authors:  Jan P Erzberger; Michelle M Pirruccello; James M Berger
Journal:  EMBO J       Date:  2002-09-16       Impact factor: 11.598

9.  ProteMiner-SSM: a web server for efficient analysis of similar protein tertiary substructures.

Authors:  Darby Tien-Hau Chang; Chien-Yu Chen; Wen-Chin Chung; Yen-Jen Oyang; Hsueh-Fen Juan; Hsuan-Cheng Huang
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

10.  Local feature frequency profile: a method to measure structural similarity in proteins.

Authors:  In-Geol Choi; Jaimyoung Kwon; Sung-Hou Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-25       Impact factor: 11.205

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