Literature DB >> 8728653

Potential energy functions for threading.

D T Jones1, J M Thornton.   

Abstract

Despite little progress in ab initio solutions to the problem of predicting a protein's tertiary structure, over the past four years or so the development of fold-recognition methods for tertiary structure prediction has been the source of some encouragement in this difficult field. Despite promising initial results, these methods are clearly not yet fully mature and many groups are now working on different aspects of the methods involved in the hope of increasing the reliability and sensitivity of these tools.

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Year:  1996        PMID: 8728653     DOI: 10.1016/s0959-440x(96)80076-5

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  21 in total

1.  Protein structure determination using a database of interatomic distance probabilities.

Authors:  M E Wall; S Subramaniam; G N Phillips
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

2.  Structure-based prediction of binding peptides to MHC class I molecules: application to a broad range of MHC alleles.

Authors:  O Schueler-Furman; Y Altuvia; A Sette; H Margalit
Journal:  Protein Sci       Date:  2000-09       Impact factor: 6.725

3.  Improved recognition of native-like protein structures using a family of designed sequences.

Authors:  Patrice Koehl; Michael Levitt
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-08       Impact factor: 11.205

4.  Statistical potentials for fold assessment.

Authors:  Francisco Melo; Roberto Sánchez; Andrej Sali
Journal:  Protein Sci       Date:  2002-02       Impact factor: 6.725

5.  Composites of local structure propensities: evidence for local encoding of long-range structure.

Authors:  David Shortle
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

6.  Enhanced protein fold recognition using secondary structure information from NMR.

Authors:  D J Ayers; P R Gooley; A Widmer-Cooper; A E Torda
Journal:  Protein Sci       Date:  1999-05       Impact factor: 6.725

7.  Crystal structure of the Bowman-Birk Inhibitor from Vigna unguiculata seeds in complex with beta-trypsin at 1.55 A resolution and its structural properties in association with proteinases.

Authors:  João Alexandre R G Barbosa; Luciano P Silva; Rozeni C L Teles; Gisele F Esteves; Ricardo B Azevedo; Manuel M Ventura; Sonia M de Freitas
Journal:  Biophys J       Date:  2006-12-01       Impact factor: 4.033

8.  Statistical potential for assessment and prediction of protein structures.

Authors:  Min-Yi Shen; Andrej Sali
Journal:  Protein Sci       Date:  2006-11       Impact factor: 6.725

9.  Statistical potential for modeling and ranking of protein-ligand interactions.

Authors:  Hao Fan; Dina Schneidman-Duhovny; John J Irwin; Guangqiang Dong; Brian K Shoichet; Andrej Sali
Journal:  J Chem Inf Model       Date:  2011-11-21       Impact factor: 4.956

10.  Quantitative prediction of protein-protein binding affinity with a potential of mean force considering volume correction.

Authors:  Yu Su; Ao Zhou; Xuefeng Xia; Wen Li; Zhirong Sun
Journal:  Protein Sci       Date:  2009-12       Impact factor: 6.725

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