Literature DB >> 8704139

Sequence analysis of a cDNA containing the gag and prot regions of the soybean retrovirus-like element, SIRE-1.

Y A Bi1, H M Laten.   

Abstract

SIRE-1 is a family of several hundred dispersed copies of a very large DNA element from Glycine max that has features characteristic of retroviruses and retrotransposons. A 2.4 kb SIRE-1-specific fragment was recovered from a soybean cDNA library and sequenced. The sequence contains two ORFs. Theoretical translation of ORF1 produces a gag-prot-like polyprotein containing highly conserved motifs found in retroelement nucleocapsids (CX2CX4HX4C) and aspartic proteases (LDSG). The second ORF is foreshortened. The cDNA also contains nearly 200 bp of a putative 5' LTR just upstream of a tRNA primer-binding site.

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Year:  1996        PMID： 8704139     DOI： 10.1007/BF00019562

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN： 0167-4412            Impact factor:   4.076


  21 in total

1.  Evolution of retroposons by acquisition or deletion of retrovirus-like genes.

Authors:  M A McClure
Journal:  Mol Biol Evol       Date:  1991-11       Impact factor: 16.240

2.  Phylogenetic relationships of reverse transcriptase and RNase H sequences and aspects of genome structure in the gypsy group of retrotransposons.

Authors:  M S Springer; R J Britten
Journal:  Mol Biol Evol       Date:  1993-11       Impact factor: 16.240

3.  A copia-like transposable element family in Arabidopsis thaliana.

Authors:  D F Voytas; F M Ausubel
Journal:  Nature       Date:  1988-11-17       Impact factor: 49.962

4.  Plant retrotransposon from Lilium henryi is related to Ty3 of yeast and the gypsy group of Drosophila.

Authors:  D R Smyth; P Kalitsis; J L Joseph; J W Sentry
Journal:  Proc Natl Acad Sci U S A       Date:  1989-07       Impact factor: 11.205

5.  Pao, a highly divergent retrotransposable element from Bombyx mori containing long terminal repeats with tandem copies of the putative R region.

Authors:  Y Xiong; W D Burke; T H Eickbush
Journal:  Nucleic Acids Res       Date:  1993-05-11       Impact factor: 16.971

6.  Nucleotide sequence of Rous sarcoma virus.

Authors:  D E Schwartz; R Tizard; W Gilbert
Journal:  Cell       Date:  1983-03       Impact factor: 41.582

7.  Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics.

Authors:  M A Grandbastien; A Spielmann; M Caboche
Journal:  Nature       Date:  1989-01-26       Impact factor: 49.962

Review 8.  Yeast retrotransposons and tRNAs.

Authors:  D F Voytas; J D Boeke
Journal:  Trends Genet       Date:  1993-12       Impact factor: 11.639

Review 9.  What is the role of the cys-his motif in retroviral nucleocapsid (NC) proteins?

Authors:  R A Katz; J E Jentoft
Journal:  Bioessays       Date:  1989-12       Impact factor: 4.345

10.  Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons.

Authors:  Z Schwarz-Sommer; L Leclercq; E Göbel; H Saedler
Journal:  EMBO J       Date:  1987-12-20       Impact factor: 11.598
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  3 in total

1.  Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma.

Authors:  Mai Komatsu; Ko Shimamoto; Junko Kyozuka
Journal:  Plant Cell       Date:  2003-08       Impact factor: 11.277

2.  A copia-like retrotransposon Tgmr closely linked to the Rps1-k allele that confers race-specific resistance of soybean to Phytophthora sojae.

Authors:  M K Bhattacharyya; R A Gonzales; M Kraft; R I Buzzell
Journal:  Plant Mol Biol       Date:  1997-05       Impact factor: 4.076

3.  SIRE-1, a copia/Ty1-like retroelement from soybean, encodes a retroviral envelope-like protein.

Authors:  H M Laten; A Majumdar; E A Gaucher
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205
  3 in total

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