Literature DB >> 8688008

Bacterioplankton Production Determined by DNA Synthesis, Protein Synthesis, and Frequency of Dividing Cells in Tuamotu Atoll Lagoons and Surrounding Ocean

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Abstract

This study compares three independent methods used for estimating bacterioplankton production in waters from the lagoon (mesotrophic) and the surrounding ocean (oligotrophic) of two atolls from the Tuamotu archipelago (French Polynesia).Thymidine and leucine incorporation were calibrated in dilution cultures and gave consistent results when the first was calibrated against cell multiplication and the second against protein synthesis. This study demonstrates that determining conversion factors strongly depends on the selected calculation method (modified derivative, integrative, and cumulative). These different estimates are reconciled when the very low proportion of active cells is accounted for.Frequency of dividing-divided cells (FDDC) calibrated using the same dilution cultures led to unrealistically high estimates of bacterial production. However, highly significant correlations between FDDC and either thymidine- or leucine-specific incorporation per cell were found in lagoon waters in situ. These correlations became more positive when oceanic data were added. This suggests that the FDDC method is also potentially valid to determine bacterioplankton growth rates after cross calibration with thymidine or leucine methods. If recommended precautions are observed, the three methods tested in the present study would give reliable production estimates.

Entities:  

Year:  1996        PMID: 8688008     DOI: 10.1007/bf00185887

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  15 in total

1.  Bacterioplankton in antarctic ocean waters during late austral winter: abundance, frequency of dividing cells, and estimates of production.

Authors:  R B Hanson; D Shafer; T Ryan; D H Pope; H K Lowery
Journal:  Appl Environ Microbiol       Date:  1983-05       Impact factor: 4.792

2.  Frequency of dividing cells as an estimator of bacterial productivity.

Authors:  S Y Newell; R R Christian
Journal:  Appl Environ Microbiol       Date:  1981-07       Impact factor: 4.792

3.  Underestimation of DNA synthesis by [h]thymidine incorporation in marine bacteria.

Authors:  W H Jeffrey; J H Paul
Journal:  Appl Environ Microbiol       Date:  1988-12       Impact factor: 4.792

4.  Annual bacterioplankton biomasses and productivities in a temperate west coast canadian fjord.

Authors:  L J Albright; S K McCrae
Journal:  Appl Environ Microbiol       Date:  1987-06       Impact factor: 4.792

5.  Fully automatic determination of soil bacterium numbers, cell volumes, and frequencies of dividing cells by confocal laser scanning microscopy and image analysis.

Authors:  J Bloem; M Veninga; J Shepherd
Journal:  Appl Environ Microbiol       Date:  1995-03       Impact factor: 4.792

6.  Bacterial productivity in the water column and sediments of the Georgia (USA) coastal zone: Estimates via direct counting and parallel measurement of thymidine incorporation.

Authors:  S Y Newell; R D Fallon
Journal:  Microb Ecol       Date:  1982-06       Impact factor: 4.552

7.  Frequency of dividing cells, a new approach to the determination of bacterial growth rates in aquatic environments.

Authors:  A Hagström; U Larsson; P Hörstedt; S Normark
Journal:  Appl Environ Microbiol       Date:  1979-05       Impact factor: 4.792

8.  Bacterioplankton cell growth and macromolecular synthesis in seawater cultures during the North Atlantic Spring Phytoplankton Bloom, May, 1989.

Authors:  H W Ducklow; D L Kirchman; H L Quinby
Journal:  Microb Ecol       Date:  1992-09       Impact factor: 4.552

9.  Leucine incorporation and its potential as a measure of protein synthesis by bacteria in natural aquatic systems.

Authors:  D Kirchman; E K'nees; R Hodson
Journal:  Appl Environ Microbiol       Date:  1985-03       Impact factor: 4.792

10.  Validity of the tritiated thymidine method for estimating bacterial growth rates: measurement of isotope dilution during DNA synthesis.

Authors:  P C Pollard; D J Moriarty
Journal:  Appl Environ Microbiol       Date:  1984-12       Impact factor: 4.792

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  6 in total

1.  Exploring bacteriplankton growth and protein synthesis to determine conversion factors across a gradient of dissolved organic matter.

Authors:  E Pulido-Villena; I Reche
Journal:  Microb Ecol       Date:  2003-07       Impact factor: 4.552

2.  Depleted dissolved organic carbon and distinct bacterial communities in the water column of a rapid-flushing coral reef ecosystem.

Authors:  Craig E Nelson; Alice L Alldredge; Elizabeth A McCliment; Linda A Amaral-Zettler; Craig A Carlson
Journal:  ISME J       Date:  2011-03-10       Impact factor: 10.302

3.  New method for counting bacteria associated with coral mucus.

Authors:  Melissa Garren; Farooq Azam
Journal:  Appl Environ Microbiol       Date:  2010-07-23       Impact factor: 4.792

4.  The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.

Authors:  Douglas B Rusch; Aaron L Halpern; Granger Sutton; Karla B Heidelberg; Shannon Williamson; Shibu Yooseph; Dongying Wu; Jonathan A Eisen; Jeff M Hoffman; Karin Remington; Karen Beeson; Bao Tran; Hamilton Smith; Holly Baden-Tillson; Clare Stewart; Joyce Thorpe; Jason Freeman; Cynthia Andrews-Pfannkoch; Joseph E Venter; Kelvin Li; Saul Kravitz; John F Heidelberg; Terry Utterback; Yu-Hui Rogers; Luisa I Falcón; Valeria Souza; Germán Bonilla-Rosso; Luis E Eguiarte; David M Karl; Shubha Sathyendranath; Trevor Platt; Eldredge Bermingham; Victor Gallardo; Giselle Tamayo-Castillo; Michael R Ferrari; Robert L Strausberg; Kenneth Nealson; Robert Friedman; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

5.  Bacterioplankton drawdown of coral mass-spawned organic matter.

Authors:  Ryan Guillemette; Ryo Kaneko; Jessica Blanton; Jasmine Tan; Matthias Witt; Samantha Hamilton; Eric E Allen; Mónica Medina; Koji Hamasaki; Boris P Koch; Farooq Azam
Journal:  ISME J       Date:  2018-06-08       Impact factor: 10.302

6.  Resilience of coral-associated bacterial communities exposed to fish farm effluent.

Authors:  Melissa Garren; Laurie Raymundo; James Guest; C Drew Harvell; Farooq Azam
Journal:  PLoS One       Date:  2009-10-06       Impact factor: 3.240

  6 in total

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