Literature DB >> 8641475

The C-terminal domain of peptide deformylase is disordered and dispensable for activity.

T Meinnel1, C Lazennec, F Dardel, J M Schmitter, S Blanquet.   

Abstract

Upon trypsinolysis, the 18 C-terminal residues of Escherichia coli peptide deformylase were removed but the resulting form exhibited full activity. Moreover, a mutant fms gene encoding the first 145 out of the 168 residues of the enzyme was able to complement a fms(Ts) strain and exhibited full activity. Upon progressive truncation up to residue 139, both activity and stability decreased up to complete inactivation. Mutagenesis of residues of the 138-145 region highlights the importance of Leu-141 and Phe-142. N-Terminal deletions were also carried out. Beyond two residues off, the enzyme showed a dramatic instability. Finally, NMR and thermostability studies of the full-length enzyme and comparison to the 1-147 form strongly suggest that the dispensable residues are disordered in solution.

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Year:  1996        PMID: 8641475     DOI: 10.1016/0014-5793(96)00357-2

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  10 in total

1.  Comparative metagenomics of microbial traits within oceanic viral communities.

Authors:  Itai Sharon; Natalia Battchikova; Eva-Mari Aro; Carmela Giglione; Thierry Meinnel; Fabian Glaser; Ron Y Pinter; Mya Breitbart; Forest Rohwer; Oded Béjà
Journal:  ISME J       Date:  2011-02-10       Impact factor: 10.302

Review 2.  Shedding new light on viral photosynthesis.

Authors:  Richard J Puxty; Andrew D Millard; David J Evans; David J Scanlan
Journal:  Photosynth Res       Date:  2014-11-09       Impact factor: 3.573

3.  Truncation of peptide deformylase reduces the growth rate and stabilizes solvent production in Clostridium beijerinckii NCIMB 8052.

Authors:  V J Evans; H Liyanage; A Ravagnani; M Young; E R Kashket
Journal:  Appl Environ Microbiol       Date:  1998-05       Impact factor: 4.792

4.  A high quality nuclear magnetic resonance solution structure of peptide deformylase from Escherichia coli: application of an automated assignment strategy using GARANT.

Authors:  J F O'Connell; K D Pryor; S K Grant; B Leiting
Journal:  J Biomol NMR       Date:  1999-04       Impact factor: 2.835

5.  Ligand-induced changes in the structure and dynamics of Escherichia coli peptide deformylase.

Authors:  Carlos D Amero; Douglas W Byerly; Craig A McElroy; Amber Simmons; Mark P Foster
Journal:  Biochemistry       Date:  2009-08-18       Impact factor: 3.162

6.  Three consecutive arginines are important for the mycobacterial peptide deformylase enzyme activity.

Authors:  Rahul Saxena; Pavitra Kanudia; Manish Datt; Haider Hussain Dar; Subramanian Karthikeyan; Balvinder Singh; Pradip K Chakraborti
Journal:  J Biol Chem       Date:  2008-06-23       Impact factor: 5.157

7.  N-alkyl urea hydroxamic acids as a new class of peptide deformylase inhibitors with antibacterial activity.

Authors:  Corinne J Hackbarth; Dawn Z Chen; Jason G Lewis; Kirk Clark; James B Mangold; Jeffrey A Cramer; Peter S Margolis; Wen Wang; Jim Koehn; Charlotte Wu; S Lopez; George Withers; Helen Gu; Elina Dunn; R Kulathila; Shi-Hao Pan; Wilma L Porter; Jeff Jacobs; Joaquim Trias; Dinesh V Patel; Beat Weidmann; Richard J White; Zhengyu Yuan
Journal:  Antimicrob Agents Chemother       Date:  2002-09       Impact factor: 5.191

8.  A unique peptide deformylase platform to rationally design and challenge novel active compounds.

Authors:  Sonia Fieulaine; Rodolphe Alves de Sousa; Laure Maigre; Karim Hamiche; Mickael Alimi; Jean-Michel Bolla; Abbass Taleb; Alexis Denis; Jean-Marie Pagès; Isabelle Artaud; Thierry Meinnel; Carmela Giglione
Journal:  Sci Rep       Date:  2016-10-20       Impact factor: 4.379

9.  Structure and function of a cyanophage-encoded peptide deformylase.

Authors:  Jeremy A Frank; Don Lorimer; Merry Youle; Pam Witte; Tim Craig; Jan Abendroth; Forest Rohwer; Robert A Edwards; Anca M Segall; Alex B Burgin
Journal:  ISME J       Date:  2013-02-14       Impact factor: 10.302

10.  The C-terminal residue of phage Vp16 PDF, the smallest peptide deformylase, acts as an offset element locking the active conformation.

Authors:  Renata Grzela; Julien Nusbaum; Sonia Fieulaine; Francesco Lavecchia; Willy V Bienvenut; Cyril Dian; Thierry Meinnel; Carmela Giglione
Journal:  Sci Rep       Date:  2017-09-08       Impact factor: 4.379

  10 in total

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