Literature DB >> 25381655

Shedding new light on viral photosynthesis.

Richard J Puxty1,2, Andrew D Millard3, David J Evans1, David J Scanlan4.   

Abstract

Viruses infecting the environmentally important marine cyanobacteria Prochlorococcus and Synechococcus encode 'auxiliary metabolic genes' (AMGs) involved in the light and dark reactions of photosynthesis. Here, we discuss progress on the inventory of such AMGs in the ever-increasing number of viral genome sequences as well as in metagenomic datasets. We contextualise these gene acquisitions with reference to a hypothesised fitness gain to the phage. We also report new evidence with regard to the sequence and predicted structural properties of viral petE genes encoding the soluble electron carrier plastocyanin. Viral copies of PetE exhibit extensive modifications to the N-terminal signal peptide and possess several novel residues in a region responsible for interaction with redox partners. We also highlight potential knowledge gaps in this field and discuss future opportunities to discover novel phage-host interactions involved in the photosynthetic process.

Entities:  

Keywords:  Auxiliary metabolic genes; Cyanophage; Photosynthesis; Plastocyanin

Mesh:

Substances:

Year:  2014        PMID: 25381655     DOI: 10.1007/s11120-014-0057-x

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  140 in total

1.  Viral photosynthetic reaction center genes and transcripts in the marine environment.

Authors:  Itai Sharon; Shani Tzahor; Shannon Williamson; Michael Shmoish; Dikla Man-Aharonovich; Douglas B Rusch; Shibu Yooseph; Gil Zeidner; Susan S Golden; Shannon R Mackey; Noam Adir; Uri Weingart; David Horn; J Craig Venter; Yael Mandel-Gutfreund; Oded Béjà
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Review 2.  The global virome: not as big as we thought?

Authors:  J Cesar Ignacio-Espinoza; Sergei A Solonenko; Matthew B Sullivan
Journal:  Curr Opin Virol       Date:  2013-07-26       Impact factor: 7.090

3.  Comparative metagenomics of microbial traits within oceanic viral communities.

Authors:  Itai Sharon; Natalia Battchikova; Eva-Mari Aro; Carmela Giglione; Thierry Meinnel; Fabian Glaser; Ron Y Pinter; Mya Breitbart; Forest Rohwer; Oded Béjà
Journal:  ISME J       Date:  2011-02-10       Impact factor: 10.302

4.  Identification of a periplasmic C-type cytochrome as electron donor to the plasma membrane-bound cytochrome oxidase of the cyanobacterium Nostoc Mac.

Authors:  C Obinger; J C Knepper; U Zimmermann; G A Peschek
Journal:  Biochem Biophys Res Commun       Date:  1990-06-15       Impact factor: 3.575

5.  Light history influences the response of the marine cyanobacterium Synechococcus sp. WH7803 to oxidative stress.

Authors:  Nicolas Blot; Daniella Mella-Flores; Christophe Six; Gildas Le Corguillé; Christophe Boutte; Anne Peyrat; Annabelle Monnier; Morgane Ratin; Priscillia Gourvil; Douglas A Campbell; Laurence Garczarek
Journal:  Plant Physiol       Date:  2011-06-13       Impact factor: 8.340

Review 6.  Physiological roles of plastid terminal oxidase in plant stress responses.

Authors:  Xin Sun; Tao Wen
Journal:  J Biosci       Date:  2011-12       Impact factor: 1.826

7.  Genome sequences of siphoviruses infecting marine Synechococcus unveil a diverse cyanophage group and extensive phage-host genetic exchanges.

Authors:  Sijun Huang; Kui Wang; Nianzhi Jiao; Feng Chen
Journal:  Environ Microbiol       Date:  2011-12-22       Impact factor: 5.491

8.  Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism.

Authors:  Luke R Thompson; Qinglu Zeng; Libusha Kelly; Katherine H Huang; Alexander U Singer; Joanne Stubbe; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-15       Impact factor: 11.205

9.  CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Authors:  Anthony Bretaudeau; François Coste; Florian Humily; Laurence Garczarek; Gildas Le Corguillé; Christophe Six; Morgane Ratin; Olivier Collin; Wendy M Schluchter; Frédéric Partensky
Journal:  Nucleic Acids Res       Date:  2012-11-21       Impact factor: 16.971

10.  Diversity and evolution of phycobilisomes in marine Synechococcus spp.: a comparative genomics study.

Authors:  Christophe Six; Jean-Claude Thomas; Laurence Garczarek; Martin Ostrowski; Alexis Dufresne; Nicolas Blot; David J Scanlan; Frédéric Partensky
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  21 in total

1.  Seasonal and diel patterns of abundance and activity of viruses in the Red Sea.

Authors:  Gur Hevroni; José Flores-Uribe; Oded Béjà; Alon Philosof
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-10       Impact factor: 11.205

2.  Distinct Features of Cyanophage-encoded T-type Phycobiliprotein Lyase ΦCpeT: THE ROLE OF AUXILIARY METABOLIC GENES.

Authors:  Raphael Gasper; Julia Schwach; Jana Hartmann; Andrea Holtkamp; Jessica Wiethaus; Natascha Riedel; Eckhard Hofmann; Nicole Frankenberg-Dinkel
Journal:  J Biol Chem       Date:  2017-01-10       Impact factor: 5.157

3.  Viruses as key reservoirs of antibiotic resistance genes in the environment.

Authors:  Didier Debroas; Cléa Siguret
Journal:  ISME J       Date:  2019-07-29       Impact factor: 10.302

4.  Prochlorococcus phage ferredoxin: structural characterization and electron transfer to cyanobacterial sulfite reductases.

Authors:  Ian J Campbell; Jose Luis Olmos; Weijun Xu; Dimithree Kahanda; Joshua T Atkinson; Othneil Noble Sparks; Mitchell D Miller; George N Phillips; George N Bennett; Jonathan J Silberg
Journal:  J Biol Chem       Date:  2020-05-19       Impact factor: 5.157

5.  Nitrogen sourcing during viral infection of marine cyanobacteria.

Authors:  Jacob R Waldbauer; Maureen L Coleman; Adriana I Rizzo; Kathryn L Campbell; John Lotus; Lichun Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-15       Impact factor: 11.205

6.  Gene Expression Patterns during Light and Dark Infection of Prochlorococcus by Cyanophage.

Authors:  Luke R Thompson; Qinglu Zeng; Sallie W Chisholm
Journal:  PLoS One       Date:  2016-10-27       Impact factor: 3.240

7.  Closing the gaps on the viral photosystem-I psaDCAB gene organization.

Authors:  Sheila Roitman; José Flores-Uribe; Alon Philosof; Ben Knowles; Forest Rohwer; J Cesar Ignacio-Espinoza; Matthew B Sullivan; Francisco M Cornejo-Castillo; Pablo Sánchez; Silvia G Acinas; Chris L Dupont; Oded Béjà
Journal:  Environ Microbiol       Date:  2015-10-14       Impact factor: 5.491

Review 8.  Marine phage genomics: the tip of the iceberg.

Authors:  Blanca Perez Sepulveda; Tamsin Redgwell; Branko Rihtman; Frances Pitt; David J Scanlan; Andrew Millard
Journal:  FEMS Microbiol Lett       Date:  2016-06-22       Impact factor: 2.742

Review 9.  Metabolic Genes within Cyanophage Genomes: Implications for Diversity and Evolution.

Authors:  E-Bin Gao; Youhua Huang; Degang Ning
Journal:  Genes (Basel)       Date:  2016-09-29       Impact factor: 4.096

10.  Energy limitation of cyanophage development: implications for marine carbon cycling.

Authors:  Richard J Puxty; David J Evans; Andrew D Millard; David J Scanlan
Journal:  ISME J       Date:  2018-01-29       Impact factor: 10.302

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