Literature DB >> 8635473

RNA editing in bryophytes and a molecular phylogeny of land plants.

O Malek1, K Lättig, R Hiesel, A Brennicke, V Knoop.   

Abstract

RNA editing has been observed to date in all groups of vascular plants, but not in bryophytes. Its occurrence was therefore assumed to correlate with the evolution of tracheophytes. To gain more insight into both the phylogeny of early land plants and the evolution of mitochondrial RNA editing we have investigated a number of vascular and non-vascular plant species. Contrary to the belief that editing is absent from bryophytes, here we report mitochondrial RNA editing in cox3 mRNA of the liverwort Pellia epiphylla, the mosses Tetraphis pellucida and Ceratodon purpureus and the hornwort Anthroceros crispulus. RNA editing in plants consequently predates the evolution of tracheophytes. Editing is also found in the eusporangiate ferns Ophioglossum petiolatum and Angiopteris palmiformis, the whisk fern Tmesipteris elongata and the gnetopsid Ephedra gerardiana, but was not detected in Gnetum gnemon.cox3 mRNA of the lycopsid Isoetes lacustris shows the highest frequency of RNA editing ever observed in a plant, with 39% of all cytidine residues converted to uridines. The frequency of RNA editing correlates with the genomic GC content rather than with the phylogenetic position of a species. Phylogenetic trees derived from the slowly evolving mitochondrial sequences find external support from the assessments of classical systematics.

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Year:  1996        PMID: 8635473      PMCID: PMC450045     

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  18 in total

1.  The protein-encoding gene T-urf13 is not edited in maize mitochondria.

Authors:  G C Ward; C S Levings
Journal:  Plant Mol Biol       Date:  1991-11       Impact factor: 4.076

2.  RNA editing in plant mitochondria.

Authors:  P S Covello; M W Gray
Journal:  Nature       Date:  1989-10-19       Impact factor: 49.962

3.  RNA editing in plant mitochondria.

Authors:  R Hiesel; B Wissinger; W Schuster; A Brennicke
Journal:  Science       Date:  1989-12-22       Impact factor: 47.728

4.  Splicing and editing of rps10 transcripts in potato mitochondria.

Authors:  S Zanlungo; V Quiñones; A Moenne; L Holuigue; X Jordana
Journal:  Curr Genet       Date:  1995-05       Impact factor: 3.886

5.  Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs.

Authors:  L Maréchal-Drouard; D Ramamonjisoa; A Cosset; J H Weil; A Dietrich
Journal:  Nucleic Acids Res       Date:  1993-10-25       Impact factor: 16.971

Review 6.  On the evolution of RNA editing.

Authors:  P S Covello; M W Gray
Journal:  Trends Genet       Date:  1993-08       Impact factor: 11.639

7.  The first analysed archegoniate mitochondrial gene (COX3) exhibits extraordinary features.

Authors:  J R Marienfeld; R Reski; W O Abel
Journal:  Curr Genet       Date:  1991-09       Impact factor: 3.886

8.  Evidence for RNA editing in mitochondria of all major groups of land plants except the Bryophyta.

Authors:  R Hiesel; B Combettes; A Brennicke
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

9.  The gene for ribosomal protein S10 is present in mitochondria of pea and potato but absent from those of Arabidopsis and Oenothera.

Authors:  V Knoop; T Ehrhardt; K Lättig; A Brennicke
Journal:  Curr Genet       Date:  1995-05       Impact factor: 3.886

10.  Chloroplast DNA evidence on the ancient evolutionary split in vascular land plants.

Authors:  L A Raubeson; R K Jansen
Journal:  Science       Date:  1992-03-27       Impact factor: 47.728

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  55 in total

1.  Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers.

Authors:  S M Chaw; C L Parkinson; Y Cheng; T M Vincent; J D Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

Review 2.  Contributions of plant molecular systematics to studies of molecular evolution.

Authors:  E D Soltis; P S Soltis
Journal:  Plant Mol Biol       Date:  2000-01       Impact factor: 4.076

3.  A putative RNA editing from U to C in a mouse mitochondrial transcript.

Authors:  Jaime Villegas; Ilse Müller; Jacob Arredondo; Rodrigo Pinto; Luis O Burzio
Journal:  Nucleic Acids Res       Date:  2002-05-01       Impact factor: 16.971

Review 4.  Eukaryotic genome evolution: rearrangement and coevolution of compartmentalized genetic information.

Authors:  Reinhold G Herrmann; Rainer M Maier; Christian Schmitz-Linneweber
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

Review 5.  Gene expression in plant mitochondria: transcriptional and post-transcriptional control.

Authors:  Stefan Binder; Axel Brennicke
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2003-01-29       Impact factor: 6.237

6.  Recognition of RNA editing sites is directed by unique proteins in chloroplasts: biochemical identification of cis-acting elements and trans-acting factors involved in RNA editing in tobacco and pea chloroplasts.

Authors:  Tetsuya Miyamoto; Junichi Obokata; Masahiro Sugiura
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

7.  Extensive loss of RNA editing sites in rapidly evolving Silene mitochondrial genomes: selection vs. retroprocessing as the driving force.

Authors:  Daniel B Sloan; Alice H MacQueen; Andrew J Alverson; Jeffrey D Palmer; Douglas R Taylor
Journal:  Genetics       Date:  2010-05-17       Impact factor: 4.562

Review 8.  When you can't trust the DNA: RNA editing changes transcript sequences.

Authors:  Volker Knoop
Journal:  Cell Mol Life Sci       Date:  2010-10-12       Impact factor: 9.261

9.  Nuclear DYW-type PPR gene families diversify with increasing RNA editing frequencies in liverwort and moss mitochondria.

Authors:  Mareike Rüdinger; Ute Volkmar; Henning Lenz; Milena Groth-Malonek; Volker Knoop
Journal:  J Mol Evol       Date:  2012-02       Impact factor: 2.395

10.  The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants.

Authors:  Monique Turmel; Christian Otis; Claude Lemieux
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-02       Impact factor: 11.205

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