Literature DB >> 8626345

Synonymous codon selection controls in vivo turnover and amount of mRNA in Escherichia coli bla and ompA genes.

A Deana1, R Ehrlich, C Reiss.   

Abstract

A number of silent codon changes were made in two Escherichia coli genes. For the ompA gene, the replacement of seven consecutive frequently used codons with synonymous infrequently used codons reduced the ompA mRNA level and its half-life. For the bla gene, the exchange of 24 codons for the most frequently used synonymous codons extended the bla mRNA half-life. A modification of ribosome traffic could account for these observations.

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Year:  1996        PMID: 8626345      PMCID: PMC178002          DOI: 10.1128/jb.178.9.2718-2720.1996

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  15 in total

Review 1.  Preventing the synthesis of unused transcripts by Rho factor.

Authors:  J P Richardson
Journal:  Cell       Date:  1991-03-22       Impact factor: 41.582

Review 2.  Codon preferences in free-living microorganisms.

Authors:  S G Andersson; C G Kurland
Journal:  Microbiol Rev       Date:  1990-06

Review 3.  E. coli RNases: making sense of alphabet soup.

Authors:  M P Deutscher
Journal:  Cell       Date:  1985-04       Impact factor: 41.582

Review 4.  Mechanisms of mRNA decay in bacteria: a perspective.

Authors:  J G Belasco; C F Higgins
Journal:  Gene       Date:  1988-12-10       Impact factor: 3.688

5.  Interactions of Escherichia coli transcription termination factor rho with RNA. II. Electron microscopy and nuclease protection experiments.

Authors:  D G Bear; P S Hicks; K W Escudero; C L Andrews; J A McSwiggen; P H von Hippel
Journal:  J Mol Biol       Date:  1988-02-20       Impact factor: 5.469

6.  Codon contexts from weakly expressed genes reduce expression in vivo.

Authors:  L S Folley; M Yarus
Journal:  J Mol Biol       Date:  1989-10-05       Impact factor: 5.469

7.  Cloned structural gene (ompA) for an integral outer membrane protein of Escherichia coli K-12: localization on hybrid plasmid pTU100 and expression of a fragment of the gene.

Authors:  E Bremer; E Beck; I Hindennach; I Sonntag; U Henning
Journal:  Mol Gen Genet       Date:  1980

8.  Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains.

Authors:  S Varenne; J Buc; R Lloubes; C Lazdunski
Journal:  J Mol Biol       Date:  1984-12-15       Impact factor: 5.469

9.  Decay of mRNA in Escherichia coli: investigation of the fate of specific segments of transcripts.

Authors:  A von Gabain; J G Belasco; J L Schottel; A C Chang; S N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205

10.  Escherichia coli ribosomes translate in vivo with variable rate.

Authors:  S Pedersen
Journal:  EMBO J       Date:  1984-12-01       Impact factor: 11.598

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  14 in total

1.  Single amino acid changes in the predicted RNase H domain of Escherichia coli RNase G lead to complementation of RNase E deletion mutants.

Authors:  Dae-hwan Chung; Zhao Min; Bi-Cheng Wang; Sidney R Kushner
Journal:  RNA       Date:  2010-05-27       Impact factor: 4.942

2.  RNA cleavage linked with ribosomal action.

Authors:  Haruyo Yamanishi; Tetsuro Yonesaki
Journal:  Genetics       Date:  2005-07-14       Impact factor: 4.562

Review 3.  Linkage map of Escherichia coli K-12, edition 10: the traditional map.

Authors:  M K Berlyn
Journal:  Microbiol Mol Biol Rev       Date:  1998-09       Impact factor: 11.056

4.  Protein secondary structural types are differentially coded on messenger RNA.

Authors:  T A Thanaraj; P Argos
Journal:  Protein Sci       Date:  1996-10       Impact factor: 6.725

5.  Tpr homologs in Treponema paraluiscuniculi Cuniculi A strain.

Authors:  Lorenzo Giacani; Eileen S Sun; Karin Hevner; Barbara J Molini; Wesley C Van Voorhis; Sheila A Lukehart; Arturo Centurion-Lara
Journal:  Infect Immun       Date:  2004-11       Impact factor: 3.441

6.  A novel endoribonuclease, RNase LS, in Escherichia coli.

Authors:  Yuichi Otsuka; Tetsuro Yonesaki
Journal:  Genetics       Date:  2005-01       Impact factor: 4.562

7.  The new pLAI (lux regulon based auto-inducible) expression system for recombinant protein production in Escherichia coli.

Authors:  Salvatore Nocadello; Erwin Frans Swennen
Journal:  Microb Cell Fact       Date:  2012-01-05       Impact factor: 5.328

8.  Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays.

Authors:  Jonathan A Bernstein; Arkady B Khodursky; Pei-Hsun Lin; Sue Lin-Chao; Stanley N Cohen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-15       Impact factor: 11.205

9.  Mammalian mutation pressure, synonymous codon choice, and mRNA degradation.

Authors:  Jubao Duan; Marcos A Antezana
Journal:  J Mol Evol       Date:  2003-12       Impact factor: 2.395

10.  Codon influence on protein expression in E. coli correlates with mRNA levels.

Authors:  Reka Letso; Helen Neely; W Nicholson Price; Grégory Boël; Kam-Ho Wong; Min Su; Jon Luff; Mayank Valecha; John K Everett; Thomas B Acton; Rong Xiao; Gaetano T Montelione; Daniel P Aalberts; John F Hunt
Journal:  Nature       Date:  2016-01-13       Impact factor: 49.962

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