Literature DB >> 8594593

The metabolic pathway collection from EMP: the enzymes and metabolic pathways database.

E Selkov1, S Basmanova, T Gaasterland, I Goryanin, Y Gretchkin, N Maltsev, V Nenashev, R Overbeek, E Panyushkina, L Pronevitch, E Selkov1, I Yunus.   

Abstract

The Enzymes and Metabolic Pathways database (EMP) is an encoding of the contents of over 10 000 original publications on the topics of enzymology and metabolism. This large body of information has been transformed into a queryable database. An extraction of over 1800 pictorial representations of metabolic pathways from this collection is freely available on the World Wide Web. We believe that this collection will play an important role in the interpretation of genetic sequence data, as well as offering a meaningful framework for the integration of many other forms of biological data.

Mesh:

Substances:

Year:  1996        PMID: 8594593      PMCID: PMC145618          DOI: 10.1093/nar/24.1.26

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  3 in total

1.  Searching for amino acid sequence motifs among enzymes: the Enzyme-Reaction Database.

Authors:  M Suyama; A Ogiwara; T Nishioka; J Oda
Journal:  Comput Appl Biosci       Date:  1993-02

2.  The ENZYME data bank.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

3.  The SWISS-PROT protein sequence data bank: current status.

Authors:  A Bairoch; B Boeckmann
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

  3 in total
  11 in total

1.  WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction.

Authors:  R Overbeek; N Larsen; G D Pusch; M D'Souza; E Selkov; N Kyrpides; M Fonstein; N Maltsev; E Selkov
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  The Cardiome Project. An integrated view of cardiac metabolism and regional mechanical function.

Authors:  J B Bassingthwaighte; H Qian; Z Li
Journal:  Adv Exp Med Biol       Date:  1999       Impact factor: 2.622

3.  The ERGO genome analysis and discovery system.

Authors:  Ross Overbeek; Niels Larsen; Theresa Walunas; Mark D'Souza; Gordon Pusch; Eugene Selkov; Konstantinos Liolios; Viktor Joukov; Denis Kaznadzey; Iain Anderson; Anamitra Bhattacharyya; Henry Burd; Warren Gardner; Paul Hanke; Vinayak Kapatral; Natalia Mikhailova; Olga Vasieva; Andrei Osterman; Veronika Vonstein; Michael Fonstein; Natalia Ivanova; Nikos Kyrpides
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

4.  Blood flows and metabolic components of the cardiome.

Authors:  J B Bassingthwaighte; Z Li; H Qian
Journal:  Prog Biophys Mol Biol       Date:  1998       Impact factor: 3.667

5.  MPW: the Metabolic Pathways Database.

Authors:  E Selkov; Y Grechkin; N Mikhailova; E Selkov
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  Functional analysis of gapped microbial genomes: amino acid metabolism of Thiobacillus ferrooxidans.

Authors:  E Selkov; R Overbeek; Y Kogan; L Chu; V Vonstein; D Holmes; S Silver; R Haselkorn; M Fonstein
Journal:  Proc Natl Acad Sci U S A       Date:  2000-03-28       Impact factor: 11.205

7.  Inactivation of isocitrate lyase leads to increased production of medium-chain-length poly(3-hydroxyalkanoates) in Pseudomonas putida.

Authors:  S Klinke; M Dauner; G Scott; B Kessler; B Witholt
Journal:  Appl Environ Microbiol       Date:  2000-03       Impact factor: 4.792

8.  Automation of gene assignments to metabolic pathways using high-throughput expression data.

Authors:  Liviu Popescu; Golan Yona
Journal:  BMC Bioinformatics       Date:  2005-08-31       Impact factor: 3.169

9.  PUMA2--grid-based high-throughput analysis of genomes and metabolic pathways.

Authors:  Natalia Maltsev; Elizabeth Glass; Dinanath Sulakhe; Alexis Rodriguez; Mustafa H Syed; Tanuja Bompada; Yi Zhang; Mark D'Souza
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

10.  Distinguishing enzymes using metabolome data for the hybrid dynamic/static method.

Authors:  Nobuyoshi Ishii; Yoichi Nakayama; Masaru Tomita
Journal:  Theor Biol Med Model       Date:  2007-05-20       Impact factor: 2.432

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.