Literature DB >> 8594591

Histone Sequence Database: a compilation of highly-conserved nucleoprotein sequences.

A D Baxevanis1, D Landsman.   

Abstract

By searching the current protein sequence databases using sequences from human and chicken histones H1/H5, H2A, H2B, H3 and H4, a database of aligned histone protein sequences with statistically significant sequence similarity to the search sequence was constructed. In addition, a nucleotide sequence database of the corresponding coding regions for these proteins has been assembled. The region of each of the core histones containing the histone fold motif is identified in the protein alignments. The database contains >1300 protein and nucleotide sequences. All sequences and alignments in this database are available through the World Wide Web at http://www.ncbi.nlm.nih.gov/Baxevani/HISTO NES.

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Year:  1996        PMID： 8594591      PMCID： PMC145601          DOI： 10.1093/nar/24.1.245

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  15 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  CLUSTAL V: improved software for multiple sequence alignment.

Authors:  D G Higgins; A J Bleasby; R Fuchs
Journal:  Comput Appl Biosci       Date:  1992-04

3.  Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II.

Authors:  P J Laybourn; J T Kadonaga
Journal:  Science       Date:  1991-10-11       Impact factor: 47.728

4.  The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix.

Authors:  G Arents; R W Burlingame; B C Wang; W E Love; E N Moudrianakis
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-15       Impact factor: 11.205

5.  Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription.

Authors:  G E Croston; L A Kerrigan; L M Lira; D R Marshak; J T Kadonaga
Journal:  Science       Date:  1991-02-08       Impact factor: 47.728

6.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

7.  Chromatin structure; oligomers of the histones.

Authors:  R D Kornberg; J O Thomas
Journal:  Science       Date:  1974-05-24       Impact factor: 47.728

8.  ALSCRIPT: a tool to format multiple sequence alignments.

Authors:  G J Barton
Journal:  Protein Eng       Date:  1993-01

9.  The ENZYME data bank in 1995.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1996-01-01       Impact factor: 16.971

Review 10.  Phosphorylation of H1 histones.

Authors:  P Hohmann
Journal:  Mol Cell Biochem       Date:  1983       Impact factor: 3.396
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  15 in total

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6.  Yeast linker histone Hho1p is required for efficient RNA polymerase I processivity and transcriptional silencing at the ribosomal DNA.

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Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-07       Impact factor: 11.205

7.  A full suite of histone and histone modifying genes are transcribed in the dinoflagellate Lingulodinium.

Authors:  Sougata Roy; David Morse
Journal:  PLoS One       Date:  2012-04-04       Impact factor: 3.240

8.  Conservation of tubulin-binding sequences in TRPV1 throughout evolution.

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9.  Cloning and Functional Analysis of Histones H3 and H4 in Nuclear Shaping during Spermatogenesis of the Chinese Mitten Crab, Eriocheir sinensis.

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10.  Expression of temperature-sensitive ion channel TRPM8 in sperm cells correlates with vertebrate evolution.

Authors:  Rakesh Kumar Majhi; Somdatta Saha; Ashutosh Kumar; Arijit Ghosh; Nirlipta Swain; Luna Goswami; Pratyush Mohapatra; Apratim Maity; Vivek Kumar Sahoo; Abhishek Kumar; Chandan Goswami
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