Literature DB >> 8594557

Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and the lacZ gene in transgenic rodents.

N F Cariello1, G R Douglas, T Soussi.   

Abstract

We have created databases and software applications for the analysis of DNA mutations in the human p53 gene, the human hprt gene and the rodent transgenic lacZ locus. The databases themselves are stand-alone dBase files and the software for analysis of the databases runs on IBM- compatible computers. The software created for these databases permits filtering, ordering, report generation and display of information in the database. In addition, a significant number of routines have been developed for the analysis of single base substitutions. One method of obtaining the databases and software is via the World Wide Web (WWW). Open home page http://sunsite.unc.edu/dnam/mainpage.ht ml with a WWW browser. Alternatively, the databases and programs are available via public ftp from anonymous@sunsite.unc.edu. There is no password required to enter the system. The databases and software are found in subdirectory pub/academic/biology/dna-mutations. Two other programs are available at the WWW site, a program for comparison of mutational spectra and a program for entry of mutational data into a relational database.

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Year:  1996        PMID: 8594557      PMCID: PMC145576          DOI: 10.1093/nar/24.1.119

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  13 in total

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Journal:  Somat Cell Mol Genet       Date:  1987-07

Review 2.  p53 mutations in human cancers.

Authors:  M Hollstein; D Sidransky; B Vogelstein; C C Harris
Journal:  Science       Date:  1991-07-05       Impact factor: 47.728

Review 3.  TP53 tumor suppressor gene: a model for investigating human mutagenesis.

Authors:  C Caron de Fromentel; T Soussi
Journal:  Genes Chromosomes Cancer       Date:  1992-01       Impact factor: 5.006

4.  In vivo somatic mutations in human lymphocytes frequently result from major gene alterations.

Authors:  D R Turner; A A Morley; M Haliandros; R Kutlaca; B J Sanderson
Journal:  Nature       Date:  1985 May 23-29       Impact factor: 49.962

5.  Database and software for the analysis of mutations in the human p53 gene.

Authors:  N F Cariello; L Cui; C Beroud; T Soussi
Journal:  Cancer Res       Date:  1994-08-15       Impact factor: 12.701

6.  Database and software for the analysis of mutations at the human hprt gene.

Authors:  N F Cariello
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971

7.  Alterations of the hprt gene in human in vivo-derived 6-thioguanine-resistant T lymphocytes.

Authors:  R J Albertini; J P O'Neill; J A Nicklas; N H Heintz; P C Kelleher
Journal:  Nature       Date:  1985 Jul 25-31       Impact factor: 49.962

8.  Software for the analysis of mutations at the human hprt gene.

Authors:  N F Cariello
Journal:  Mutat Res       Date:  1994-04       Impact factor: 2.433

9.  DNA sequence analysis of spontaneous and N-ethyl-N-nitrosourea-induced hprt mutations arising in vivo in cynomolgus monkey T-lymphocytes.

Authors:  P R Harbach; A L Filipunas; Y Wang; C S Aaron
Journal:  Environ Mol Mutagen       Date:  1992       Impact factor: 3.216

10.  Temporal and molecular characteristics of mutations induced by ethylnitrosourea in germ cells isolated from seminiferous tubules and in spermatozoa of lacZ transgenic mice.

Authors:  G R Douglas; J Jiao; J D Gingerich; J A Gossen; L M Soper
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-01       Impact factor: 11.205

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  7 in total

1.  Databases and software for the analysis of mutations in the human p53 gene, human hprt gene and both the lacI and lacZ gene in transgenic rodents.

Authors:  N F Cariello; G R Douglas; N J Gorelick; D W Hart; J D Wilson; T Soussi
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

2.  Databases and software for the analysis of mutations in the human p53 gene, the human hprt gene and both the lacI and lacZ gene in transgenic rodents.

Authors:  N F Cariello; G R Douglas; M J Dycaico; N J Gorelick; G S Provost; T Soussi
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

3.  The GDB Human Genome Database Anno 1997.

Authors:  K H Fasman; S I Letovsky; P Li; R W Cottingham; D T Kingsbury
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

4.  Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects.

Authors:  P Hainaut; T Soussi; B Shomer; M Hollstein; M Greenblatt; E Hovig; C C Harris; R Montesano
Journal:  Nucleic Acids Res       Date:  1997-01-01       Impact factor: 16.971

5.  Mutational fingerprints of aging.

Authors:  Martijn E T Dollé; Wendy K Snyder; David B Dunson; Jan Vijg
Journal:  Nucleic Acids Res       Date:  2002-01-15       Impact factor: 16.971

6.  Genetic selection of intragenic suppressor mutations that reverse the effect of common p53 cancer mutations.

Authors:  R K Brachmann; K Yu; Y Eby; N P Pavletich; J D Boeke
Journal:  EMBO J       Date:  1998-04-01       Impact factor: 11.598

7.  Databases and QSAR for cancer research.

Authors:  Adeel Malik; Hemajit Singh; Munazah Andrabi; Syed Akhtar Husain; Shandar Ahmad
Journal:  Cancer Inform       Date:  2007-02-15
  7 in total

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