Literature DB >> 8590280

Prediction of the coding sequences of unidentified human genes. IV. The coding sequences of 40 new genes (KIAA0121-KIAA0160) deduced by analysis of cDNA clones from human cell line KG-1.

T Nagase1, N Seki, A Tanaka, K Ishikawa, N Nomura.   

Abstract

In this series of projects regarding the accumulation of sequence information of unidentified human genes, we newly deduced the sequences of 40 full-length cDNA clones of human cell line KG-1, and predicted the coding sequences of the corresponding genes, named KIAA0121 to 0160. The results of a computer search of public databases indicated that the sequences of 13 genes were unrelated to any reported genes, while the remaining 27 genes carried sequences which showed some similarities to known genes. Obvious unique sequences noted were as follows. A stretch of triplet repeats was contained in each of three genes: These were GAG(Glu) in KIAA0122 and KIAA0147, and TCC(Ser) in KIAA0150. A stretch of 10 amino acid-residues was repeated 21 times in KIAA0139, and a homologous sequence of 76-78 nucleotides was found repeated 6 times in the untranslated region of KIAA0125. Northern hybridization analysis demonstrated that 13 genes were expressed in a cell- or tissue-specific manner. Although a vast number of expressed sequence tags (ESTs) have been registered for comprehensive analysis of cDNA clones, our sequence data indicated that their distribution is very unbalanced: e.g. while no EST hit 7 genes, 85 ESTs fell in a single gene.

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Year:  1995        PMID: 8590280     DOI: 10.1093/dnares/2.4.167

Source DB:  PubMed          Journal:  DNA Res        ISSN: 1340-2838            Impact factor:   4.458


  48 in total

1.  Phosphorylation of SNAP-23 by the novel kinase SNAK regulates t-SNARE complex assembly.

Authors:  J P Cabaniols; V Ravichandran; P A Roche
Journal:  Mol Biol Cell       Date:  1999-12       Impact factor: 4.138

2.  Gene expression profiles in normal and Otx2-/- early gastrulating mouse embryos.

Authors:  L Zakin; B Reversade; B Virlon; C Rusniok; P Glaser; J M Elalouf; P Brulet
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

3.  Human scribble (Vartul) is targeted for ubiquitin-mediated degradation by the high-risk papillomavirus E6 proteins and the E6AP ubiquitin-protein ligase.

Authors:  S Nakagawa; J M Huibregtse
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

4.  Protein sequence similarity searches using patterns as seeds.

Authors:  Z Zhang; A A Schäffer; W Miller; T L Madden; D J Lipman; E V Koonin; S F Altschul
Journal:  Nucleic Acids Res       Date:  1998-09-01       Impact factor: 16.971

5.  Evidence for PDZ domains in bacteria, yeast, and plants.

Authors:  C P Ponting
Journal:  Protein Sci       Date:  1997-02       Impact factor: 6.725

Review 6.  VGLL4 is a transcriptional cofactor acting as a novel tumor suppressor via interacting with TEADs.

Authors:  Xiaochong Deng; Lin Fang
Journal:  Am J Cancer Res       Date:  2018-06-01       Impact factor: 6.166

7.  Muskelin, a novel intracellular mediator of cell adhesive and cytoskeletal responses to thrombospondin-1.

Authors:  J C Adams; B Seed; J Lawler
Journal:  EMBO J       Date:  1998-09-01       Impact factor: 11.598

8.  beta2-Adrenergic receptor regulation by GIT1, a G protein-coupled receptor kinase-associated ADP ribosylation factor GTPase-activating protein.

Authors:  R T Premont; A Claing; N Vitale; J L Freeman; J A Pitcher; W A Patton; J Moss; M Vaughan; R J Lefkowitz
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-24       Impact factor: 11.205

9.  Comprehensive proteomic analysis of nonintegrin laminin receptor interacting proteins.

Authors:  Lisa Venticinque; Daniel Meruelo
Journal:  J Proteome Res       Date:  2012-08-29       Impact factor: 4.466

10.  New Alzheimer amyloid beta responsive genes identified in human neuroblastoma cells by hierarchical clustering.

Authors:  Markus Uhrig; Carina Ittrich; Verena Wiedmann; Yuri Knyazev; Annette Weninger; Matthias Riemenschneider; Tobias Hartmann
Journal:  PLoS One       Date:  2009-08-26       Impact factor: 3.240

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